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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATGCCTTGTGAATGGAGGAGTATCTGAAGTGAACAACTCCTTATGTAATGACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGTGgtagttgtaccctgaacaatatgttttctttattctctgtgtcttcctaaatatttatgcttgtttcagcactaacttaagtaaaacctgcatcatagag...

Basic information

species Arabidopsis thaliana
transcript AT1G51690.3
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86070772|gb|DR366529.1|DR366529
EST:     ATGACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGTGG                         T
genomic: ATGACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGT-Ggtagttgtac ... acatatacag-
EST: gi|86070772|gb|DR366529.1|DR366529
EST:     ATGACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGTGG                         T
genomic: ATGACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGT-Ggtagttgtac ... acatatacag-
EST: gi|86070772|gb|DR366529.1|DR366529
EST:     ATGACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGTGG                         T
genomic: ATGACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGT-Ggtagttgtac ... acatatacag-
EST: gi|125027931|gb|EL100200.1|EL100200
EST:     TTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGTG                         GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATG
genomic: TTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGTGgtagttgtac ... acatatacagGTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATG
EST: gi|86070770|gb|DR366527.1|DR366527
EST:     GACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGATNNNNNTGGTA                         GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGC
genomic: GACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGAT--TACCAGTGgtagttgtac ... acatatacagGTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGC