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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGACAGTATTCTCGCAGACTCCGGCACTGAGCAGCTCGAGTTTATTGCCCTTTCCCAAAGGACAGGGGACCCAAAATATCAGCAGAAGgtagatactaattttgagtttgtccaacagattttctttatatcctaactcggtgtgaaaaagtgggcaatcaatctgcattaatgctgaagaaaatattggctgctcaagattgacacgtttgctaactcatgtctctcag

Basic information

species Arabidopsis thaliana
transcript AT1G51590.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G51590.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv09s0054g00370.t01 (Vitis vinifera), 5'ss of exon 7
GGAGACAGTATTCTCGCAGACTCCGGCACTGAGCAGCTCGAGTTTATTGCCCTTTCCCAAAGGACAGGGGACCCAAAATATCAGCAGAAGgtagatactaattttgagtttgtccaacagattttctttatatcctaactcggtgtgaaaaagtgggcaatcaatctgcattaatgctgaagaa-aatattggctgctcaagattgacacgtttgctaactcatgtctctcag
|| || ||||| || || || |||||||| |||||||| ||||||||||||||||| |||||||| || || ||||| |||||| | |||||| || |   || ||  | | |                |     |   |   ||||    |     ||  | | ||     |||  |  | |  ||| |                                           
GGTGATAGTATCCTAGCGGATTCCGGCACAGAGCAGCTGGAGTTTATTGCCCTTTCTCAAAGGACTGGTGATCCAAAGTATCAGAAAAAGgtatattcctcttatgcttatatgtgcacacaccaaaaaaggaattgttttcatgtgtcttaaaattcagacgacctttgacaattttctaaagtaatgt-------------------------------------------

upper sequence: AT1G51590.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv09s0054g00230.t01 (Vitis vinifera), 5'ss of exon 2
GGAGACAGTATTCTCGCAGACTCCGGCACTGAGCAGCTCGAGTTTATTGCCCTTTCCCAAAGGACAGGGGACCCAAAATATCAGCAGAAGgtagatactaattttgagtttgtccaacagattttctttatatcctaactcggtgtgaaaaagtgggcaatcaatctgcattaat-gctgaagaaaatattggctgctcaagattgacacgtttgctaactcatgtctctcag
|| |||||||| || || || |||||||| |||||||| ||||||||||||||||| |||||||| || || ||||| |||||| | |||||| || |   || ||  | | |                |     |   |   ||||    |    |||    | ||     |||     ||   ||| |                                           
GGTGACAGTATCCTAGCCGATTCCGGCACAGAGCAGCTGGAGTTTATTGCCCTTTCTCAAAGGACTGGTGATCCAAAGTATCAGAAAAAGgtatattcctcttatgcttatatgtgcacacaccaaaaaaggaattgttttcatgtgtcttaaaatgcagatgacctttgacaattatctaaagtaatgt-------------------------------------------