1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAAAATTATATCTGCCAAAAGTAAACAGATCGAGTGGAGCTGCCATAGACATGTGGATAAAGgtggtgctcacattcttatacccttctgtgtaattccctcaagtttctttacctctactgtaatgaataatcctctggcag
species | Arabidopsis thaliana |
transcript | AT1G49970.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGCCAAAAGTAAACAGATCGAGTGGAGCTGCCATAGACATGTGGATAAAG GCCAAGGAACTTGATGCAAATMCCGAGTACTACATCGAGCTGTTAGCTAAGEST: gi|86080505|gb|DR376262.1|DR376262
genomic: TGCCAAAAGTAAACAGATCGAGTGGAGCTGCCATAGACATGTGGATAAAGgtggtgctca ... cctctggcagGCCAAGGAACTTGATGCAAATACCGAGTACTACATCGAGCTGTTAGCTAAG
EST: TGCCAAAAGTAAACAGWTCGAGTGGAGCTGCCATAGACATGTGGATAAAG GCCAAGGAACTTGATGCAAATACCGAGTACTACATCGAGCTGTTAGCTAAGEST: gi|47831292|gb|CK120976.1|CK120976
genomic: TGCCAAAAGTAAACAGATCGAGTGGAGCTGCCATAGACATGTGGATAAAGgtggtgctca ... cctctggcagGCCAAGGAACTTGATGCAAATACCGAGTACTACATCGAGCTGTTAGCTAAG
EST: TGCCAAAAGTAAACAGATCGAGTGGAGCTGCCATAGACATGTGGATAAAG GCCAAGGAACTTGATGCAAATACCGAGTACTACATCGAGCTGTTAGCTAAGEST: gi|124764299|gb|EH854429.1|EH854429
genomic: TGCCAAAAGTAAACAGATCGAGTGGAGCTGCCATAGACATGTGGATAAAGgtggtgctca ... cctctggcagGCCAAGGAACTTGATGCAAATACCGAGTACTACATCGAGCTGTTAGCTAAG
EST: AAAAGTAAACAGATCGAGTGGAGCTGCCATAGACATGTGGATAAAG GCCAAGGAACTTGATGCAAATACCGAGTACTACAATCGAGCTGTTAGCTAAEST: gi|86078722|gb|DR374479.1|DR374479
genomic: AAAAGTAAACAGATCGAGTGGAGCTGCCATAGACATGTGGATAAAGgtggtgctca ... cctctggcagGCCAAGGAACTTGATGCAAATACCGAGTACTACA-TCGAGCTGTTAGCTAA
EST: TGCCAAAAGTAAACAGATCGAGTGGAGCTGCCATAGACATGTGGATAAAG GCCAAGGAACTTGATGCAAATACCGAGTACTACATCGAGCTGTTAGCTAAG
genomic: TGCCAAAAGTAAACAGATCGAGTGGAGCTGCCATAGACATGTGGATAAAGgtggtgctca ... cctctggcagGCCAAGGAACTTGATGCAAATACCGAGTACTACATCGAGCTGTTAGCTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAATTATATCTGCCAAAAGTAAACAGATCGAGTGGAGCTGCCATAGACATGTGGATAAAGgtggtgctcacattcttatacccttctgtgtaattccctcaagtttctttacctctactgtaatgaataatcctctggcag
- - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - AGCTGC