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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAACTGGTGTTTTACTTAGAAGGTTACTTGTGGATCGTAGCCTGAAAGGTGTGACTCATGTCGTAGTTGATGAGATTCATGAACGTGGAATGAATGAAGgtaaattttggtaatttactaaagggaataaatgccatcagtaactgccagtatcatattaacacactctttctcttttctgtcag

Basic information

species Arabidopsis thaliana
transcript AT1G48650.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G48650.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 7
ACAACTGGTGTTTTACTTAGAAGGTTACTTGTGGATCGTAGCCTGAAAGGTGTGACTCATGTCGTAGTTGATGAGATTCATGAACGTGGAATGAATGAAGgtaaattttggtaatttactaaagggaataaatgccatcagtaactgccagtatcatattaacacactctttctcttttctgtcag
|| || ||||| ||| |  | || || ||||||||| | |   | |||||||| ||||||||  | |||||||| ||||||||||||||||||||||||||||    |   |||||   | |    |||   | | ||             ||| ||| | || ||||  || ||   |  |||||
ACCACAGGTGTATTATTGCGGAGATTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGgtag--ctaaataattgttttattccaatt--ttctatt---------ttatatgatacttac-cactggttttcacat--gtcag

upper sequence: AT1G48650.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G05480.1 (Glycine max), 5'ss of exon 7
ACAACTGGTGTTTTACTTAGAAGGTTACTTGTGGATCGTAGCCTGAAAGGTGTGACTCATGTCGTAGTTGATGAGATTCATGAACGTGGAATGAATGAAGgtaaattttggtaatttactaaagggaataaatgccatcagtaactgccagtatcatattaacacactctttctcttttctgtcag
|| || ||||| ||| |  | ||  | ||||||||| | |   | |||||||| ||||||||  | |||||||| |||||||||||||||||||| ||||||| ||      || | |||     |  | | | | ||     | |     ||| ||| | ||   | ||   | |    ||||||
ACCACGGGTGTATTATTGCGGAGACTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAACGAAGgtagat------aaataact-----gttttacttcaattttctatttt--atatgatacttac---ccctggttttcccatgtcag

upper sequence: AT1G48650.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv17s0000g03030.t01 (Vitis vinifera), 5'ss of exon 6
ACAACTGGTGTTTTACTTAGAAGGTTACTTGTGGATCGTAGCCTGAAAGGTGTGACTCATGTCGTAGTTGATGAGATTCATGAACGTGGAATGAATGAAGgtaaattttggtaatttactaaagggaataaatgccatcagtaactgccagtatcatattaacacactctttctcttttctgtcag
|| |||||  | ||| | ||||| |||||||| ||  | |   |||| ||||| ||||||||  | || |||||||||||||||||||||||||||||||||||  ||            |||  || | |||| ||| | |   |    || |||  ||   |   |  |   | ||| | ||||
ACTACTGGCATATTATTGAGAAGATTACTTGTTGACAGAAATTTGAAGGGTGTAACTCATGTTATCGTCGATGAGATTCATGAACGTGGAATGAATGAAGgtaatattc-----------aaattgactgaatgtcattatttggt----gtttcaatttcttatggtagtctgcatttatttcag

upper sequence: AT1G48650.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ13473 (Selaginella moellendorffii), 5'ss of exon 7
ACAACTGGTGTTTTACTTAGAAGGTTACTTGTGGATCGTAGCCTGAAAGGTGTGACTCATGTCGTAGTTGATGAGATTCATGAACGTGGAATGAATGAAGgtaaattttggtaatttactaaagggaa-taaatgccatcagtaactgccagtatcatattaacacactctttctcttttctgtcag
||||| ||  || |  | ||| | ||  |    || |  || || || |||||||| |||||  | ||||||||||| |||||||| || ||||||||||||||  ||   || ||  | |||  |   | |  |   ||  |   |  |  | |||                              
ACAACGGGAATTCTGTTGAGACGCTTGTTGACTGACCCAAGTCTCAAGGGTGTGACGCATGTGATTGTTGATGAGATACATGAACGGGGCATGAATGAAGgtaaggttctttatttctcaaaaccgtgctgagcgtggtcttt---tttctttctcag-----------------------------

upper sequence: AT1G48650.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ19043 (Selaginella moellendorffii), 5'ss of exon 7
ACAACTGGTGTTTTACTTAGAAGGTTACTTGTGGATCGTAGCCTGAAAGGTGTGACTCATGTCGTAGTTGATGAGATTCATGAACGTGGAATGAATGAAGgtaaattttggtaatttactaaagggaa-taaatgccatcagtaactgccagtatcatattaacacactctttctcttttctgtcag
||||| ||  || |  | ||| | ||  |    || |  || || || |||||||| |||||  | ||||||||||| |||||||| || ||||||||||||||  ||   ||  |  | |||  |   | |  |   ||  |   |  |  | |||                              
ACAACGGGAATTCTGTTGAGACGCTTGTTGACTGACCCAAGTCTCAAGGGTGTGACGCATGTGATTGTTGATGAGATACATGAACGGGGCATGAATGAAGgtaaggttctttatgtctcaaaaccgtgctgagcgtggtcttt---tttctttctcag-----------------------------