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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGCTGAGGCATTTTCTGAAAGGCTGAAGCGAGAGCTCCAAGCGCTTGAAGCGGCAAATGTACATGCAATTCTTGAAAGCGAACCATTAGTAGATGAGgttattccttttctgctaataattattctttggattatcttggtattagacagttcatgggaagacaagtgtttaattttcttgtatatatatcttcatgcttttcag

Basic information

species Arabidopsis thaliana
transcript AT1G47550.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G47550.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA04G03710.1 (Glycine max), 5'ss of exon 7
TGAAGCTGAGGCATTTTCTGAAAGGCTGAAGCGAGAGCTCCAAGCGCTTGAAGCGGCAAATGTACATGCAATTCTTGAAAGCGAACCATTAGTAGATGAGgttattccttttctgctaataattattctttggattatcttggtattag---acagttcatgggaagacaagtgtttaattttcttgtatatatatcttcatgcttttcag
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TGAAGCCGAGGCATTTTCTGAAAGGTTAAAAAGAGAGCTCCAGGCTCTGGAAGCAGCAAATGTGCATGCCATTTTAGAAAGTGAACCTCTGATAGATGAGgt-ataactgttctttgagttgatttcctttc--ttttgctggtattaccttactgtttatttgtgttactgtaaacaggccccttg-attcatgtatt-acatt------