1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAACAAGACAAGACTTCTATACCGAATGTCACTAGACTTTGCTCCTATATTAAAGAATCTTCCATTCATGGAACATCTGTGGAGACATTTCGCTGAACAGgtaaaagtacatcacaaatggatcgatcatcttcaaccatcgtcacagtcttgtttcttaagttaccgtttctatatttccag
species | Arabidopsis thaliana |
transcript | AT1G44446.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGTGGAGACATTTCGCTGAACAG GTCTTAAACGAAGATCTACGGCTAGTTTTAGGACAACAAGAACGGATGTTAEST: gi|86082745|gb|DR378504.1|DR378504
genomic: CTGTGGAGACATTTCGCTGAACAGgtaaaagtac ... atatttccagGTCTTAAACGAAGATCTACGGCTAGTTTTAGGACAACAAGAACGGATGTTA
EST: TAAAGAATCTTCCATTCATGGAACATCTGTGGAGACATTTCGCTGAACAG GTCTTAAACGAAGATCTACGGCTAGTTTTAGGACAACAAGAACGGATGTTAEST: gi|125025720|gb|EL097989.1|EL097989
genomic: TAAAGAATCTTCCATTCATGGAACATCTGTGGAGACATTTCGCTGAACAGgtaaaagtac ... atatttccagGTCTTAAACGAAGATCTACGGCTAGTTTTAGGACAACAAGAACGGATGTTA
EST: TAAAGAATCTTCCATTCATGGAACATCTGTGGAGACATTTCGCTGAACAG GTCTTAAACGAAGATCTACGGCTAGTTTTAGGACAACAAGAACGGATGTEST: gi|124741640|gb|EH832802.1|EH832802
genomic: TAAAGAATCTTCCATTCATGGAACATCTGTGGAGACATTTCGCTGAACAGgtaaaagtac ... atatttccagGTCTTAAACGAAGATCTACGGCTAGTTTTAGGACAACAAGAACGGATGT
EST: TAAAGAATCTTCCATTCATGGAACATCTGTGGAGACATTTCGCTGAACAG GTCTTAAACGAAGATEST: gi|124873473|gb|EH955118.1|EH955118
genomic: TAAAGAATCTTCCATTCATGGAACATCTGTGGAGACATTTCGCTGAACAGgtaaaagtac ... atatttccagGTCTTAAACGAAGAT
EST: AATCTTCCATTCATGGAACATCTGTGGAGACATTTCGCTGAACAG GTCTTAAACGAAGATCTACGGCTAAGTTTTAAGGACAACAAGAACGGATGT
genomic: AATCTTCCATTCATGGAACATCTGTGGAGACATTTCGCTGAACAGgtaaaagtac ... atatttccagGTCTTAAACGAAGATCTACGGCTA-GTTTTA-GGACAACAAGAACGGATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACAAGACAAGACTTCTATACCGAATGTCACTAGACTTTGCTCCTATATTAAAGAATCTTCCATTCATGGAACATCTGTGGAGACATTTCGCTGAACAGgtaaaagtacatcacaaatggatcgatcatcttcaaccatcgtcacagtcttgtttcttaagttaccgtttctatatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA