Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCTTGACACTTTCAACACGGCTGTAGTTTCACCTATATACTATGTTATGTTCACATCATTGACCATCCTAGCTAGTGTCATCATGTTTAAGgtgaaagtataatataataactcttggtgttttctctaatttgttttggtaactagagataacaacaattgttaatttatgtggaacag

Basic information

species Arabidopsis thaliana
transcript AT1G34470.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G34470.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 7
GCGCTTGACACTTTCAACACGGCTGTAGTTTCACCTATATACTATGTTATGTTCACATCATTGACCATCCTAGCTAGTGTCATCATGTTTAAGgtgaaagtataatataataac--tcttggtgttttc----tcta----------atttgttttggtaactagagataacaacaattgttaatttatgtggaacag
|| || ||||| || ||||||||  | ||||| |||||||| || || ||||||||||||||||||||||| || ||||  |||||||| |||||    |   |   || || |  || |    || ||    | ||          || ||||||  ||| |||   |    |  ||  || ||   |         
GCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAGgtttgtgctgacgctactagcaatcctaccattgtcaaagtttagagcaacaatatctgtttttctaagtaggtctg-tgaagatgattgatccgtacacc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083704|gb|DR379463.1|DR379463
EST:     ATGTTATGTTCACATCATTGACCATCCTAGCTAGTGTCATCATGTTTAAG                         GACTGGGATCGACAGGACGGAACTCAGATAGTGACGGAGTTGTGTGGGTTT
genomic: ATGTTATGTTCACATCATTGACCATCCTAGCTAGTGTCATCATGTTTAAGgtgaaagtat ... tgtggaacagGACTGGGATCGACAGGACGGAACTCAGATAGTGACGGAGTTGTGTGGGTTT