Sequence
atgc intronic sequence ATGC exonic sequenceTGAAGATGTAGTCTTTGTTGCCAATGACTGGCACACTGCTCTACTTCCATGTTACCTCAAATCTATGTATCAATCCCGCGGAGTCTACATGAATGCAAAGgtatagatataatttttgttccttcatcatgttaattagctattcatcttaaagtagcaaacattaccaaatcttgaactgaaactctagctttgatactttttacaatgaatatcaaaatattttacttttttttag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G32900.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G32900.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA10G31540.1 (Glycine max), 5'ss of exon 7
TGAAGATGTAGTCTTTGTTGCCAATGACTGGCACACTGCTCTACTTCCATGTTACCTCAAATCTATGTATCAATCCCGCGGAGTCTACATGAATGCAAAGgtatagatataatt-tttgttccttcatcatgttaattagctattcatcttaaagtagcaaacattaccaaatcttgaactgaaactctagctttgatactttttacaatgaatatcaaaatattttacttttttttag
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CGACGATGTAATCTTTATTGCCAATGATTGGCACACTGCCCTTCTTCCATGTTACTTGAAATCAATGTACCAGACCAGGGGGATTTACAAAAACGCAAAGgtgagaatttatttactttctgcatgtttgtcttcaccattcattctttctaggtaaactgactttcc----ttttgactcatcatggcag------------------------------------------------
upper sequence: AT1G32900.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G36040.1 (Glycine max), 5'ss of exon 7
TGAAGATGTAGTCTTTGTTGCCAATGACTGGCACACTGCTCTACTTCCATGTTACCTCAAATCTATGTATCAATCCCGCGGAGTCTACATGAATGCAAAGgtatagatataatt-tttgttccttcatcatgttaattagctattcatcttaaagtagcaaacattaccaaatcttgaactgaaactctagctttgatactttttacaatgaatatcaaaatattttacttttttttag
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CGAAGATGTAATTTTTATTGCCAATGATTGGCACACTGCCCTTCTTCCATGCTACTTGAAATCAATGTACCAGACCAAGGGGATTTACAAAAACGCAAAGgtgaggatttatttactttatgcatgtttgtcttcatcagtcattcattctagggaaactgactttcc----ttttgacccatcatggcag------------------------------------------------
upper sequence: AT1G32900.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv02s0025g02790.t01 (Vitis vinifera), 5'ss of exon 8
TGAAGATGTAGTCTTTGTTGCCAATGACTGGCACACTGCTCTACTTCCATGTTACCTCAAATCTATGTATCAATCCCGCGGAGTCTACATGAATGCAAAGgtatagatataatttttgttccttcatcatgttaattagctattcatcttaaagtagcaaacattaccaaatcttgaa--ctgaaactctagctttgatactttttacaatgaatatcaaaatattttacttttttttag
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AGAGGATGTTGTCTTCATTGCTAATGACTGGCACACTGCTATTCTTCCATGCTACCTCAAATCAATGTACCAATCTAGTGGAATTTACAGAAATGCCAAGgtaaaagggtgtttgattttacttgagagtgt--agcatttaga-attctagccaactcagaagtcccatttcttgagggctgaggttttg--cttggtaaactatgccag-----------------------------
upper sequence: AT1G32900.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S33_144V6.1 (Physcomitrella patens), 5'ss of exon 6
TGAAGATGTAGTCTTTGTTGCCAATGACTGGCACACTGCTCTACTTCCATGTTACCTCAAATCTATGTATCAATCCCGCGGAGTCTACATGAATGCAAAGgtatagatataatttttgttccttcatcatgttaattagctattcatcttaaagtagcaaacattaccaaatcttgaactgaaactctagctttgatactttttacaatgaatatcaaaatattttacttttttttag
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TGAAAATGTTGTCTTTGTGGCCAACGACTGGCATACTGCTCTACTTCCATGCTATCTTAAGAGTGAATACAAGCCTGCTGGGCAATTCGAAAATGCCAAGgtg-agtgataatgc--ggttggacagta-gcaaactgacaaatcttgttgtacgttgagattatatttc-tctcagagtggagcaggtactcttatcaatctaa---------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|163983778|gb|ES060540.1|ES060540EST: TGAATGCAAAG GTGGTCTTCTGCATTCACAACATAGCCTACCAGGGAAGATTTGCCTTTGAT
genomic: TGAATGCAAAGgtatagatat ... ttttttttagGTGGTCTTCTGCATTCACAACATAGCCTACCAGGGAAGATTTGCCTTTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAGATGTAGTCTTTGTTGCCAATGACTGGCACACTGCTCTACTTCCATGTTACCTCAAATCTATGTATCAATCCCGCGGAGTCTACATGAATGCAAAGgtatagatataatttttgttccttcatcatgttaattagctattcatcttaaagtagcaaacattaccaaatcttgaactgaaactctagctttgatactttttacaatgaatatcaaaatattttacttttttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG