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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTTGTGACTGGTCTGATTGGAGCTAACTTTGTACAAGTTGTTCTTGACAAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAGgtgactccattacaaaagatctttcacattttgaattaaaattatgcattaatgccattaggatcaaaagacatgacctttctattttttatggacag

Basic information

species Arabidopsis thaliana
transcript AT1G32080.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G32080.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA16G15800.1 (Glycine max), 5'ss of exon 7
TCGTTGTGACTGGTCTGATTGGAGCTAACTTTGTACAAGTTGTTCTTGACAAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAGgtg-actccatta-caaaagatctttcacat--tttgaattaaaatt---atgcatt--aatgccattaggatcaaaagacatgacctttctattttttatggacag
| ||  | || |||||| ||||||| || ||||| ||||     ||||| |||||  | || ||||||||||||||||||||||| ||||||||||| ||||  | ||  | | ||| ||||  || || |      |||   | ||    ||||||  ||  |    |    || |||  |        | |  ||||        
TTGTATTAACCGGTCTGGTTGGAGCAAATTTTGTGCAAGCAACCCTTGATAAACTCAGCTTTCGTGATCCAATTGCTCGGGGAATAGCAACTGCTTCTAGgtatattctgtgatcaatagatagtttacttaaccaaaatcccattttcactgcattccaaaacttccactgccacaagttaaaggtcaccaacattttt-------

upper sequence: AT1G32080.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G34720.1 (Glycine max), 5'ss of exon 9
TCGTTGTGACTGGTCTGATTGGAGCTAACTTTGTACAAGTTGTTCTTGACAAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAGgtgactccattacaaaagatctttcacattttgaattaaaattatgcattaatgccattaggatcaaaagacatgaccttt--ctattttttatggacag
| ||  | ||||||||| ||||||| || ||||| ||||     || || |||||  |||| || |||||||||||||||||||| ||||||||||| ||||   | |  |    || |  |   |  |    ||  |||||      || |    | |     |       |  ||| |    ||    | |   ||| 
TTGTATTAACTGGTCTGGTTGGAGCAAATTTTGTGCAAGCAACACTCGATAAACTCAGTTTTCGAGATCCAATTGCTCGGGGAATAGCAACTGCTTCTAGgtatattctgtgatcaatagataatagttcactaaccaaaatcccattttcactgtactccacacttccattaccaccataagttaaaggtcacctacat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125026871|gb|EL099140.1|EL099140
EST:     GGGGAATTGCAACTGCTTCAAG                         TGCTCATGGACTTGGAACAGCAGCTTTGTCGGCTAAGGAGCCAGAGGCTCT
genomic: GGGGAATTGCAACTGCTTCAAGgtgactccat ... ttatggacagTGCTCATGGACTTGGAACAGCAGCTTTGTCGGCTAAGGAGCCAGAGGCTCT
EST: gi|86080362|gb|DR376119.1|DR376119
EST:     AAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAG                         TGCTCATGGACTTGGAACAGCAGCTTTGTCGGCTAAGGAGCCAGAGGCTCT
genomic: AAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAGgtgactccat ... ttatggacagTGCTCATGGACTTGGAACAGCAGCTTTGTCGGCTAAGGAGCCAGAGGCTCT
EST: gi|47830990|gb|CK120674.1|CK120674
EST:     AAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAG                         TGCTCATGGACTTGGAACAGCAGCTTTGTCGGCTAAGGAGCCAGAGGCTCT
genomic: AAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAGgtgactccat ... ttatggacagTGCTCATGGACTTGGAACAGCAGCTTTGTCGGCTAAGGAGCCAGAGGCTCT
EST: gi|86080193|gb|DR375950.1|DR375950
EST:     AAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAG                         TGCTCATGGACTTGGAACAGCAGCTTTGTCGGCTAAGGAGCCAGAGGCTCT
genomic: AAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAGgtgactccat ... ttatggacagTGCTCATGGACTTGGAACAGCAGCTTTGTCGGCTAAGGAGCCAGAGGCTCT
EST: gi|125040682|gb|EL112951.1|EL112951
EST:     AAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAG                         TGCTCATGGACTTGGAACAGCAG
genomic: AAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAGgtgactccat ... ttatggacagTGCTCATGGACTTGGAACAGCAG
EST: gi|125109496|gb|EL161922.1|EL161922
EST:     AAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAG                         TGCTCATGGACTTGGAACAG
genomic: AAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAGgtgactccat ... ttatggacagTGCTCATGGACTTGGAACAG