Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCTCTGAAGATTGCTTCATGCTTTCTCGTGGTTATCCTTATGTGGGAGATTCCTGGAGTTTTTGAGATTTTCTGGAGTCCTCTGGCATTCTTACTGGgtcagtaacaaatttctctcatttttcataccatttttgtcatgtggctgatctgtagttctgtcttctacacaaatattttggatggcatgcttgaataaaaattggtaactaacgttgatattctgtctttaacacaaatacag

Basic information

species Arabidopsis thaliana
transcript AT1G29890.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G29890.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 3
ATGGCTCTGAAGATTGCTTCATGCTTTCTCGTGGTTATCCTTATGTGGGAGATTCCTGGAGTTTTTGAGATTTTCTGGAGTCCTCTGGCATTCTTACTGGgtcagtaac----aaatttctctcatttttcataccatttttgtcatgtggctgatctgtagttctgtcttctacacaaatattttggatggcatgcttgaataaaaattggtaactaacgttgatattctgtctttaacacaaatacag
|||||| |||||||   | |||||||||| ||||||||| | || ||||| ||||||||||||||||| |||||||||||||||   ||||||||| | ||| ||||||      |   || | |    | | | |||  |  |  |    || |       |||    |  |    ||||    |||||  |||   |                                                   
ATGGCTGTGAAGATCCTTGCATGCTTTCTTGTGGTTATCTTGATCTGGGAAATTCCTGGAGTTTTTGACATTTTCTGGAGTCCTTCAGCATTCTTATTAGgtaagtaacctgcggagcccttttagacatga-atcatactgtttctacaactaaaaaacttttcaaattaatttggaaatgagctggatttcattgctac-------------------------------------------------