Sequence
atgc intronic sequence ATGC exonic sequenceCATAAATGCTTCATAGTAGCTACTTGTGATAGAGATCTAAAGCGAAGGATTCGCAAGgtaaagatgttagtttgatatatatgctttttgaaatccatggctaggatccttggatgttaactttcttattgttcgtttatag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G26530.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G26530.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G140689_T01 (Zea mays), 5'ss of exon 6
CATAAATGCTTCATAGTAGCTACTTGTGATAGAGATCTAAAGCGAAGGATTCGCAAGgtaaagatgttagtttgatatatatgctttttgaaatcc-------atggctaggatccttggatgttaactttcttattgttcgtttatag----------
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CACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtatgtttggt-gtttagtgctcatagctcaggacatgcttctaatatcgcaaaagctttttcatgcatgcttgtaccatgggcatttccccaatcttgcag
upper sequence: AT1G26530.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G017761_T01 (Zea mays), 5'ss of exon 9
CATAAATGCTTCATAGTAGCTACTTGTGATAGAGATCTAAAGCGAAGGATTCGCAAGgtaaagatgttagtttgatatatatgctttttgaaatcc-------atggctaggatccttggatgttaactttcttattgttcgtttatag----------
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CACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtatgtttggt-gtttagtgctcatagctcaggacatgcttctaatatcgcaaaagctttttcatgcatgcttgtaccatgggcatttccccaattttgcag
upper sequence: AT1G26530.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv15s0046g02690.t01 (Vitis vinifera), 5'ss of exon 7
CATAAATGCTTCATAGTAGCTACTTGTGATAGAGATCTAAAGCGAAGGATTCGCAAGgtaaagatgttagtttgatatatatgctttttgaaatccatggc-taggatccttggatgttaactttcttattgttcgtttatag---------------------------
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CATAAATGCTACATTGTTGCTACATGCGATCGAGACTTGAAGCGAAGGATTCGCAAGgtaaaaatgaattgatgatgctcatgacttgataattactttgcatcaagttccaatatatttttgataggtgcatcaagttctaataaatgaaatttcttttcaatgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116464334|gb|EG506926.1|EG506926EST: GCTTCATAGTAGCTACTTGTGATAGAGTTCTAAAGCGAAGGATTCGCAAG ATTCCTGGTGTACCAATCATGTATGTGACCCAACGCAAGTACTCAATAGAG
genomic: GCTTCATAGTAGCTACTTGTGATAGAGATCTAAAGCGAAGGATTCGCAAGgtaaagatgt ... tcgtttatagATTCCTGGTGTACCAATCATGTATGTGACACAACGCAAGTACTCAATAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATAAATGCTTCATAGTAGCTACTTGTGATAGAGATCTAAAGCGAAGGATTCGCAAGgtaaagatgttagtttgatatatatgctttttgaaatccatggctaggatccttggatgttaactttcttattgttcgtttatag
- - - - - - - - - - - - - - - GAGATC