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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAGCAACTATACTTAAAAGGAACAGCCATGTATTTGCTACTGATAAGGTGTTTGTGAAAATCGATTGGCTTGAGCAACTGAATCGTCACTACATGCAGgtctgtctatctatactcattcaccatcatttgctagaaaattgattgttcatctggctttatgatgacagtactcttgttcccagttactatgaaatttctttatctccccaaaaaaatatgactacaatattcaaattttgttataaacag

Basic information

species Arabidopsis thaliana
transcript AT1G26190.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G26190.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA02G14110.1 (Glycine max), 5'ss of exon 7
AATAGCAACTATACTTAAAAGGAACAGCCATGTATTTGCTACTGATAAGGTGTTTGTGAAAATCGATTGGCTTGAGCAACTGAATCGTCACTACATGCAGgtctgtctatctatactcattcaccatcatttgctagaaaattgattgttcatctggctttatgatgacagtactcttgttcccagttactatgaaatttctttatctccccaaaaaaatatgactacaatattcaaattttgttataaacag
|||||| ||||| ||||| || ||||||||||| ||| ||  ||||| ||| | ||||||| | ||||||||||||||||| ||| | || ||  | |||||    |||  | || ||  | |   |    | ||| || | | |   || |    ||||||    || |    | || ||   | || || ||   ||| |  || ||                                            
AATAGCTACTATCCTTAAGAGAAACAGCCATGTCTTTTCTGATGATAGGGTTTGTGTGAAACTAGATTGGCTTGAGCAACTTAATAGACATTATGTTCAGgtaatactagatttagtctataatactataattctataatact-accattaaat--gctttaccgggata----tattttttgaaattcctctgt--tttttagatttc--------------------------------------------

upper sequence: AT1G26190.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv01s0010g01080.t01 (Vitis vinifera), 5'ss of exon 6
AATAGCAACTATACTTAAAAGGAACAGCCATGTATTTGCTACTGATAAGGTGTTTGTGAAAATCGATTGGCTTGAGCAACTGAATCGTCACTACATGCAGgtctgtctatctatactcattcaccatcatttgc--tagaaaattgattgttcatctggctt-tatgatgacagtactcttgttcccagttactatgaaatttctttatctccccaaaaaaatatgactacaatattcaaattttgttataaacag
|||||||||||| || ||||| |||||||||| |||| ||  ||| | ||||| ||||||||| |||||| | || || || || ||||| || || ||||| |  ||   |||  |   | ||  ||||||    |||| | |  | || | || |  | | ||   || ||||  || |||| | |     | | |  |                                                       
AATAGCAACTATCCTGAAAAGAAACAGCCATGCATTTTCTGATGACAGGGTGTGTGTGAAAATTGATTGGTTGGAACAGCTAAACCGTCAATATATTCAGgtattactgaatatttttgct-actttcatttatgatagagattacactgattattttccatatagattggcagttttcatgtttctaaaccttttaaggt-------------------------------------------------------