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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTATCATCGGATTCTTCTCAACATGTCCGCTCTGCTCTAGCTTCAGTAATAATGGGGATGGCTCCTATCCTTGGGAAGgtatgaactgaagatagccaacattttcgcatcttgtgacaatgttctgagatttaatttgttttatggttttcatcaacaaaatcagccataccttgtgttatggcgtggttataccagccccaactggtgttgcagaccttatcaaaaaattattaacatactaaaatctttcaatacag

Basic information

species Arabidopsis thaliana
transcript AT1G25490.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G25490.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 7
GAATTATCATCGGATTCTTCTCAACATGTCCGCTCTGCTCTAGCTTCAGTAATAATGGGGATGGCTCCTATCCTTGGGAAGgtatgaactgaagatagccaacattttcgcatcttgtgacaatgttctgagatttaatttgttttatggttttcatcaacaaaatcagccataccttgtgttatggcgtggttataccagccccaactggtgttgcagaccttatcaaaaaattattaacatactaaaatctttcaatacag
||||| ||||| ||||||||||| |||||||| |||||| | ||||||||||||||||| ||||||||  |  | || ||||||| |     ||||| |     |||  |||    || |   |  |||       |||     ||||   | ||||     || |         ||||       | |   || |||                                                                 
GAATTGTCATCAGATTCTTCTCAGCATGTCCGGTCTGCTTTGGCTTCAGTAATAATGGGAATGGCTCCAGTGTTGGGAAAGgtataagtgtcagatatcag---tttctgca----gttattgttctctagacaggaatacacattatctgtatcat----gaagttgtttggggcttg------agggcccttgtac-----------------------------------------------------------------

upper sequence: AT1G25490.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 7
GAATTATCATCGGATTCTTCTCAACATGTCCGCTCTGCTCTAGCTTCAGTAATAATGGGGATGGCTCCTATCCTTGGGAAGgtatgaactgaagatagccaacattttcgcatcttgtgacaatgttctgagatttaatttgttttatggttttcatcaa--caaaatcagccataccttgtgttatggcgtggttataccagccccaactggtgttgcagaccttatcaaaaaattattaacatactaaaatctttcaatacag
||||| ||||| |||||||| || |||||||| |||||| | ||||||||||||||||| ||||||||  |  | || ||||||| |     | ||| |     |||  |||    || |   |  |||       |||     |||| | | |||| ||    ||||| |   |   ||| |   ||  |                                                                          
GAATTGTCATCAGATTCTTCACAGCATGTCCGGTCTGCTTTGGCTTCAGTAATAATGGGAATGGCTCCAGTGTTGGGAAAGgtataagtgtcaaatatctg---tttctgca----gttattgttctctagacagaaatacacattatcggtatcatgaaggtgaaatctgttgt---ttggggcttgagg--------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124710952|gb|EH802354.1|EH802354
EST:     AATGGGGATGGCTCCTATCCTTGGGAAG                         GACTCAACCATTGAGCATCTGTTACCAATTTTTCTTTCCCTTTTGAAAGAT
genomic: AATGGGGATGGCTCCTATCCTTGGGAAGgtatgaactg ... ttcaatacagGACTCAACCATTGAGCATCTGTTACCAATTTTTCTTTCCCTTTTGAAAGAT
EST: gi|47830292|gb|CK119976.1|CK119976
EST:     GCTCTGCTCTAGCTTCAGTAATAATGGGGATGGCTCCTATCCTTGGGAAG                         GACTCAACCATTGAGCATCTGTTACCAATTTTTCTTTCCCTTTTGAAAGAT
genomic: GCTCTGCTCTAGCTTCAGTAATAATGGGGATGGCTCCTATCCTTGGGAAGgtatgaactg ... ttcaatacagGACTCAACCATTGAGCATCTGTTACCAATTTTTCTTTCCCTTTTGAAAGAT