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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTGTGGAGTTGGTCGCTGACTTTGTAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTGgtaataagacttctgtataccaaaaccctttccttttaatttgtatgctttatttcttatacttgtttgtttactttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G25260.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125078443|gb|EL140828.1|EL140828
EST:     TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTG                         CGTCTATTGCGAATGAAGATGGCTACTTT
genomic: TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTGgtaataagac ... tactttgcagCGTCTATTGCGAATGAAGATGGCTACTTT
EST: gi|86075213|gb|DR370970.1|DR370970
EST:     TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTG                         CGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTGCTCTGCAGA
genomic: TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTGgtaataagac ... tactttgcagCGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTGCTCTGCAGA
EST: gi|86050068|gb|DR345823.1|DR345823
EST:     TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTG                         CGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTGCTCTGCAGA
genomic: TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTGgtaataagac ... tactttgcagCGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTGCTCTGCAGA
EST: gi|124982451|gb|EL055260.1|EL055260
EST:     CGCCAAAATCAGCCCACATTTTG                         CGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTGCTCTGCAGA
genomic: CGCCAAAATCAGCCCACATTTTGgtaataagac ... tactttgcagCGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTGCTCTGCAGA
EST: gi|164121943|gb|ES162018.1|ES162018
EST:     TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTG                         CGTCTATTGCGAA
genomic: TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTGgtaataagac ... tactttgcagCGTCTATTGCGAA
EST: gi|125015187|gb|EL087456.1|EL087456
EST:     TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTG                         CGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTG
genomic: TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTGgtaataagac ... tactttgcagCGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTG
EST: gi|125221580|gb|EL235665.1|EL235665
EST:     AGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATACAGCCCACATTTTG                         CGTCTATTGCGAATGAAGATGGCTACTTT
genomic: AGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAAT-CAGCCCACATTTTGgtaataagac ... tactttgcagCGTCTATTGCGAATGAAGATGGCTACTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACTGTGGAGTTGGTCGCTGACTTTGTAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTGgtaataagacttctgtataccaaaaccctttccttttaatttgtatgctttatttcttatacttgtttgtttactttgcag

- - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - -  AAGGAA