Sequence
atgc intronic sequence ATGC exonic sequenceGTGGAGAACATTCTTGTTATTGGACACAGCTGTTGTGGTGGAATAAAGGGACTCATGGCCATTGAAGATAATACAGCTCCCACTAAGACgtattaatctcaaaggctaatttaatcaaccatgagtttcttgtgattagttctcactaacttgatgtaaattcttgaaaagggtag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G23730.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G23730.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G03720.6 (Glycine max), 5'ss of exon 7
GTGGAGAACATTCTTGTTATTGGACACAGCTGTTGTGGTGGAATAAAGGGACTCATGGCCATTGAAGATAATACAGCTCCCAC----TAAGACgtattaatctcaaaggctaat-----ttaa----tcaaccatgagttt---cttgtgat--tagttctcactaacttgatgtaaattc--ttgaaaagggtag---
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GTGGAGAATATTGTAGTTATTGGACACAGTTGCTGTGGAGGTATAAAGGGGCTCATGTCTATCCCAGATGACGGGACCACTGCAAGGCAAGTCTTATACgttgctattgcttgtgtctcttaaagcatctttcatgggttttaccatgtgatattggattaaaaaaatttaataattttttattttaacaatataaatg
upper sequence: AT1G23730.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA02G03990.1 (Glycine max), 5'ss of exon 8
GTGGAGAACATTCTTGTTATTGGACACAGCTGTTGTGGTGGAATAAAGGGACTCATGGCCATTGAAGATAATACAGCTCCCACTAAG-ACgtatta-atctcaaaggctaatttaatcaaccatgagtttcttgtgattagttctcactaacttgatgtaaattcttgaaaagggtag--------
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GTGGAGAATATTGTAGTTATTGGACACAGTTGCTGTGGAGGTATAAAGGGGCTCATGTCTATCCCAGATGACGGGACCACTGCAAGgcaagtcttatatatacgttactattattgctatatatatatgtctcttaaagcatctttaatggtttttaagcatttcaataactttttatttcaacga
upper sequence: AT1G23730.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G03720.2 (Glycine max), 5'ss of exon 9
GTGGAGAACATTCTTGTTATTGGACACAGCTGTTGTGGTGGAATAAAGGGACTCATGGCCATTGAAGATAATACAGCTCCCAC----TAAGACgtattaatctcaaaggctaatttaatcaaccatgagtttcttgtgattagttctcactaacttgatgtaaattcttgaaaagggtag------
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GTGGAGAATATTGTAGTTATTGGACACAGTTGCTGTGGAGGTATAAAGGGGCTCATGTCTATCCCAGATGACGGGACCACTGCAAGgcaagtcttatacgttgctattgcttgtgtctcttaaagcatctttcatgggttttaccatgtgatattggattaaaaaaatttaataattttttatttt
upper sequence: AT1G23730.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv01s0127g00720.t01 (Vitis vinifera), 5'ss of exon 7
GTGGAGAACATTCTTGTTATTGGACACAGCTGTTGTGGTGGAATAAAGGGACTCATGGCCATTGAAGATAATACAGCTCCCACTAAG-ACgtattaatctcaaaggctaatttaatcaaccatgagtttcttgtgattagttctcactaacttgat-gtaaattcttgaaaagggtag----------
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GTGGAGAATATTGTAGTCATTGGACACAGCTGTTGTGGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAGgtaagtctttatcttct--tttgctggcattgtgcaagcccttatgatagtttcatattactcatcaaaccgtccatttttattaaagcaatatcataaaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116425150|gb|EG467742.1|EG467742EST: GGAATAAAGGGACTCATGGCCATTGAAGATAATACAGCTCCCACTAAGAC CGAGTTCATAGAAAACTGGATCCAGATCTGTGCCCCGGCCAAGAACAGGAT
genomic: GGAATAAAGGGACTCATGGCCATTGAAGATAATACAGCTCCCACTAAGACgtattaatct ... aaaagggtagCGAGTTCATAGAAAACTGGATCCAGATCTGTGCACCGGCCAAGAACAGGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGAGAACATTCTTGTTATTGGACACAGCTGTTGTGGTGGAATAAAGGGACTCATGGCCATTGAAGATAATACAGCTCCCACTAAGACgtattaatctcaaaggctaatttaatcaaccatgagtttcttgtgattagttctcactaacttgatgtaaattcttgaaaagggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC