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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTCTTGTTCCTTACTATCTTGATGAGTCTGAAAACTGGGGACTTGATGTTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactctttttccttcttctcttgcaataatcggtgatgtctttcttgctccagttacaaattgtcttgaatgcatgtacag

Basic information

species Arabidopsis thaliana
transcript AT1G23310.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125262500|gb|EL276585.1|EL276585
EST:     TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAAC
genomic: TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAAC
EST: gi|124731088|gb|EH822490.1|EH822490
EST:     TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
genomic: TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
EST: gi|116482909|gb|EG525501.1|EG525501
EST:     TTGCTAACCTTCGACAATCCGTTGCTCACGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGGCCAGTGTCT
genomic: TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGG-CCAGTGTCT
EST: gi|124952199|gb|EL027489.1|EL027489
EST:     CTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
genomic: CTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
EST: gi|124778965|gb|EH868908.1|EH868908
EST:     TTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
genomic: TTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
EST: gi|125267683|gb|EL281768.1|EL281768
EST:     TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGT
genomic: TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGT
EST: gi|116434550|gb|EG477142.1|EG477142
EST:     TTGCTAACCTTCGACAATCAGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
genomic: TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
EST: gi|125278036|gb|EL292121.1|EL292121
EST:     TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATT
genomic: TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATT
EST: gi|125269833|gb|EL283918.1|EL283918
EST:     GTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
genomic: GTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
EST: gi|124723960|gb|EH815362.1|EH815362
EST:     GTTGCTCAGGCCTCGTTCTCAAGGGATAACA                         GTAAGGGCAAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCT
genomic: GTTGCTCAGG-CTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGC-AATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCT
EST: gi|125129745|gb|EL173347.1|EL173347
EST:     GCTAACCTTCGACAATCCGTTGCTCAGGTCTTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
genomic: GCTAACCTTCGACAATCCGTTGCTCAGG-C-TCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
EST: gi|125286187|gb|EL300272.1|EL300272
EST:     TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTG
genomic: TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTG
EST: gi|301502125|gb|HO207665.1|HO207665
EST:     TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
genomic: TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
EST: gi|125035680|gb|EL107949.1|EL107949
EST:     TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAAT
genomic: TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAAT
EST: gi|124861964|gb|EH946401.1|EH946401
EST:     TTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
genomic: TTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
EST: gi|124952327|gb|EL027608.1|EL027608
EST:     TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCA
genomic: TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCA
EST: gi|124868826|gb|EH953263.1|EH953263
EST:     GCTAACCTTCGACAATCCGTTTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
genomic: GCTAACCTTCGACAATCCG--TTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
EST: gi|116434562|gb|EG477154.1|EG477154
EST:     TTGCTAACCTTCGACAATCAGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
genomic: TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
EST: gi|124704296|gb|EH795698.1|EH795698
EST:     TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCA
genomic: TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCA
EST: gi|124705364|gb|EH796766.1|EH796766
EST:     TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAAC
genomic: TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAAC
EST: gi|116482910|gb|EG525502.1|EG525502
EST:     TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
genomic: TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
EST: gi|124888248|gb|EH967150.1|EH967150
EST:     CAGGCCCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
genomic: CAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
EST: gi|124915325|gb|EH989199.1|EH989199
EST:     CTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
genomic: CTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
EST: gi|124784117|gb|EH873885.1|EH873885
EST:     CTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAAACCCAACTGGCCAGTGTCT
genomic: CTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAA-CCCAACTGGCCAGTGTCT
EST: gi|86074134|gb|DR369891.1|DR369891
EST:     TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
genomic: TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
EST: gi|86074114|gb|DR369871.1|DR369871
EST:     TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
genomic: TTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
EST: gi|124768652|gb|EH858782.1|EH858782
EST:     CAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACA                         GTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA
genomic: CAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAgtaagcactc ... gcatgtacagGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTA