Sequence
atgc intronic sequence ATGC exonic sequenceCCAGCTGCCAGATTTTTTCGGTGGTACTTGCACTTGTGCAGATCAGGGAGGTTGTATGAGATCTGATAAAGGGCCCTGGAAAGACTCTGAGATACTAAAGgtggagtgcttgtgtcttcatactccacatcttattgttcgttatgtttctgttatactgatgttaaacctaactatacaggattcagctaatgatttctcagtgttcatgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G19650.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G19650.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA04G03230.1 (Glycine max), 5'ss of exon 7
CCAGCTGCCAGATTTTTTCGGTGGTACTTGCACTTGTGCAGATCAGGGAGGTTGTATGAGATCTGATAAAGGGCCCTGGAAAGACTCTGAGATACTAAAGgtggagtgcttgtgtcttcatac-tccacatcttattgttcgttatgtttctgtta-----tactgatgttaaacctaactatacagg--attcagctaatgattt--ct----cagtgtt---catgcag
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TGAGCTGCCAGAATTTCTTGGTGGCAGTTGCACTTGTGTAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAAGACCCAAACATTTTAAAGgtttgctaattatcatgtaatttatatacagactgttattctgtaaattttgattagttctctcaggtcttcagttctactttgcatcttactgtgtctgtgactcaactagaacaattttgggcatgcag
upper sequence: AT1G19650.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA06G03300.1 (Glycine max), 5'ss of exon 8
CCAGCTGCCAGATTTTTTCGGTGGTACTTGCACTTGTGCAGATCAGGGAGGTTGTATGAGATCTGATAAAGGGCCCTGGAAAGACTCTGAGATACTAAAGgtggagtgcttgt---gtcttcatactccacatcttattgttcgttatgtttctgttatact-----gatgttaaacctaactatacag--gattcagctaatgattt--ct----cagtgtt---catgcag
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TGAGCTGCCAGAATTTCTTGCTGGTAGTTGCACTTGTGTAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAAGACCCAAACATTTTAAAGgtttgctacttatcatgtaatttttatacagactgtgttattcagtaagttttaattagtcctctcaggctttctgttctactttgcatcttactgagtctgtgattcaactagaacaattttgggcatgcag
upper sequence: AT1G19650.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA17G37150.1 (Glycine max), 5'ss of exon 8
CCAGCTGCCAGATTTTTTCGGTGGTACTTGCACTTGTGCAGATCAGGGAGGTTGTATGAGATCTGATAAAGGGCCCTGGAAAGACTCTGAGATACTAAAGgtggagtgcttgtgtcttcatactccacatcttattgttcgttatgtttctgttatactgatgttaaacctaactatacaggattcagctaatgatttctcagtgttcatgcag
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CAAGCTGCCTGAATTTCTAGGTGGTAGTTGCACTTGTATAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAGgtttgctgcttaaaatgtaatacttagagtctgatt-ttaactaaatattaagtatgcttctgt--gactcagcaaga-acagttgcgttcatgcag-----------------
upper sequence: AT1G19650.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA14G07850.3 (Glycine max), 5'ss of exon 8
CCAGCTGCCAGATTTTTTCGGTGGTACTTGCACTTGTGCAGATCAGGGAGGTTGTATGAGATCTGATAAAGGGCCCTGGAAAGACTCTGAGATACTAAAGgtggagtgcttgtgtcttcatactccacatcttattgttcgttatgtttctgttatactgatgttaaacctaactatacaggattcagctaatgatttctcagtgttcatgcag
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CGAGCTGCCTGAATTTCTAGGTGGTAATTGCACTTGTATGGATCGAGGTGGTTGTATGAGATCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAGgtttgctgcttataatgtaaaacttggactctgatt-ttcactaaatatttagtatgcttctgt--gacttagc------agaaacagt-------------gtgttcatgcag
upper sequence: AT1G19650.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 8
CCAGCTGCCAGATTTTTTCGGTGGTACTTGCACTTGTGCAGATCAGGGAGGTTGTATGAGATCTGATAAAGGGCCCTGGAAAGACTCTGAGATACTAAAGgtggagtgcttgtgtcttcatact-ccacatcttattgttcgttatgtttctgttatactgatgtta--aacctaacta-tacaggattcagctaatgatttctcagtgttcatgcag--------------------------
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TGAGTTGCCCGAATTTCTCGGTGGTAGCTGTATCTGTGCAGATCAGGGAGGTTGTTTGAAGTCTGATAAGGGGCCGTGGAAAGATCCAAACATATTAAAGgtctggttgtcat--cttgaaactattaaatattgat-tcagttgtgcaattgatcaagtcactcttctagcctatcttctaatgcacttgtttggaaattgtactttgtaaatgttttgaatgacatgattgtctgcgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86088306|gb|DR384065.1|DR384065EST: GTTGTATGAGATCTGATAAAGGGCCCTGGAAAGACTCTGAGATACTAAAG ATGGGCCGCAGTGGTGGGACGTTCTGTAGGCATGCTGGTGCTTTCCTAAGC
genomic: GTTGTATGAGATCTGATAAAGGGCCCTGGAAAGACTCTGAGATACTAAAGgtggagtgct ... gttcatgcagATGGGCCGCAGTGGTGGGACGTTCTGTAGGCATGCTGGTGCTTTCCTAAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCAGCTGCCAGATTTTTTCGGTGGTACTTGCACTTGTGCAGATCAGGGAGGTTGTATGAGATCTGATAAAGGGCCCTGGAAAGACTCTGAGATACTAAAGgtggagtgcttgtgtcttcatactccacatcttattgttcgttatgtttctgttatactgatgttaaacctaactatacaggattcagctaatgatttctcagtgttcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC