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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATAAGAAGGACGCAAATTATGAGGCTACCCAACACCACTTTCAGAATCTGAGACAGAGGTATGGGAACCGGATAATAATTCTCAACCTCCTAAAGgtaggctctctcattttctaggaaaagtcaaattcttatgcccgttcttggattattgaaagattgagtgtatcgttgctattttgtgttgtcag

Basic information

species Arabidopsis thaliana
transcript AT1G17340.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164059850|gb|ES161877.1|ES161877
EST:     ATCTGAGACAGAGGTATGGGAACCGGATAATAATTCTCAACCTCCTAAAG                         ACTGTGACAGGTGAGAAAAAGCACCGAGAAACCATCTTAAGGGGAGAGTTT
genomic: ATCTGAGACAGAGGTATGGGAACCGGATAATAATTCTCAACCTCCTAAAGgtaggctctc ... gtgttgtcagACTGTGACAGGTGAGAAAAAGCACCGAGAAACCATCTTAAGGGGAGAGTTT
EST: gi|125289392|gb|EL303477.1|EL303477
EST:     TGGGAACCGGGATAATAATTCTCAACCTCCTAAAG                         ACTGTGACAGGTGAGAAAAAGCACCGAGAAACCATCTTAAGGGGAGAGTTT
genomic: TGGGAACC-GGATAATAATTCTCAACCTCCTAAAGgtaggctctc ... gtgttgtcagACTGTGACAGGTGAGAAAAAGCACCGAGAAACCATCTTAAGGGGAGAGTTT