1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CAAGGGGTTACGTGATGCAATTGCTGATGGAATCGAAGCCCGTGATGGTTTCCCTGCTGATCCTAATGATATATTCATGACAGATGGTGCAAGTCCAGGGgtaaggattatcaaactaatcttctcgtaactcgtagaatctggaacaccttgttttgaagttgacagtgatgttcctctccttctag
species | Arabidopsis thaliana |
transcript | AT1G17290.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATTCATGACAGATGGTGCAAGTCCAGGG GTTCATATGATGATGCAACTTCTCATAACTTCAGAGAAAGATGGAATCCTTEST: gi|116451787|gb|EG494379.1|EG494379
genomic: ATTCATGACAGATGGTGCAAGTCCAGGGgtaaggatta ... ctccttctagGTTCATATGATGATGCAACTTCTCATAACTTCAGAGAAAGATGGAATCCTT
EST: TCCCTGCTGATCCTAATGATATATTCATGACAGATGGTGCAAGTCCAGGG GTTCATATGATGATGCAACTTCTCATAACTTCAGAGAAAGATGGAATCCTTEST: gi|164005531|gb|ES197917.1|ES197917
genomic: TCCCTGCTGATCCTAATGATATATTCATGACAGATGGTGCAAGTCCAGGGgtaaggatta ... ctccttctagGTTCATATGATGATGCAACTTCTCATAACTTCAGAGAAAGATGGAATCCTT
EST: ATGATATATTCATGACAGATGGTGCAAGTCCAGGG GTTCATATGATGATGCAACTTCTCATAACTTCAGAGAAAGATGGAATCCTTEST: gi|116471643|gb|EG514235.1|EG514235
genomic: ATGATATATTCATGACAGATGGTGCAAGTCCAGGGgtaaggatta ... ctccttctagGTTCATATGATGATGCAACTTCTCATAACTTCAGAGAAAGATGGAATCCTT
EST: GCTGATCCTAATGATATATTCATGACAGATGGTGCAAGTCCAGGG GTTCATATGATGATGCAACTTCTCATAACTTCAGAGAAAGATGGAATCCTTEST: gi|124807775|gb|EH894179.1|EH894179
genomic: GCTGATCCTAATGATATATTCATGACAGATGGTGCAAGTCCAGGGgtaaggatta ... ctccttctagGTTCATATGATGATGCAACTTCTCATAACTTCAGAGAAAGATGGAATCCTT
EST: ATGGTGCAAGTCCAGGG GTTCATATGATGATGCAACTTCTCATAACTTCAGAGAAAGATGGAATCCTT
genomic: ATGGTGCAAGTCCAGGGgtaaggatta ... ctccttctagGTTCATATGATGATGCAACTTCTCATAACTTCAGAGAAAGATGGAATCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGGGTTACGTGATGCAATTGCTGATGGAATCGAAGCCCGTGATGGTTTCCCTGCTGATCCTAATGATATATTCATGACAGATGGTGCAAGTCCAGGGgtaaggattatcaaactaatcttctcgtaactcgtagaatctggaacaccttgttttgaagttgacagtgatgttcctctccttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG