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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCAAAAGAAATACATTGGTATCTGGTGGTGTACGCGGAACCTTACCATGGATGGCACCAGAGCTTCTCAATGGTAGCAGCAGCAAAGTTTCAGAGAAGgtaaaattaaatacttcatagtgaatataaagaatgggaacaaattgagttataactgtttttcctgcag

Basic information

species Arabidopsis thaliana
transcript AT1G16270.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164141589|gb|ES101468.1|ES101468
EST:     AAAGTTTCAGAGAAG                         GTCGATGTCTTCTC-TTTGGTATAGTCTTGTGGGAGATTCTAACCGGCGAG
genomic: AAAGTTTCAGAGAAGgtaaaattaa ... tttcctgcagGTCGATGTCTTCTCTTTTGGTATAGTCTTGTGGGAGATTCTAACCGGCGAG
EST: gi|116459442|gb|EG502034.1|EG502034
EST:     GGATGGCACCAGAGCTTCTCAATGGTAGCAGCAGCAAAGTTTCAGAGAAG                         GTCGATGTCTTCTCTTTTGGTATAGTCTTGTGGGAGACTCTAACCGGCGAG
genomic: GGATGGCACCAGAGCTTCTCAATGGTAGCAGCAGCAAAGTTTCAGAGAAGgtaaaattaa ... tttcctgcagGTCGATGTCTTCTCTTTTGGTATAGTCTTGTGGGAGATTCTAACCGGCGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATCAAAAGAAATACATTGGTATCTGGTGGTGTACGCGGAACCTTACCATGGATGGCACCAGAGCTTCTCAATGGTAGCAGCAGCAAAGTTTCAGAGAAGgtaaaattaaatacttcatagtgaatataaagaatgggaacaaattgagttataactgtttttcctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG