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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAGGAAAATCCTTGAACGGGAATTGGCCCGTGCGAAGGTAAATGCAAACAGAGTTGCTACTGTTGTAGCTAACGAATGGAAAGATTCTAATGACAAAgtgatgcctgtaaggcagtggcttgaagaacgtagatttttgcaggtcattgctgatacatattaatatttaaattctcttgctgcttcaaattgtgattcatattcacggagattaacttatactattgccaccaccgttatgtttggacag

Basic information

species Arabidopsis thaliana
transcript AT1G14840.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G14840.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os02g50320.2 (Oryza sativa), 5'ss of exon 7
AGAGAGGAAAATCCTTGAACGGGAATTGGCCCGTGCGAAGGTAAATGCAAACAGAGTTGCTACTGTTGTAGCTAACGAATGGAAAGATTCTAATGACAAAgtgatgcctgtaaggcagtggcttgaagaacgtagatttttgcaggtcattgctgataca----tattaatattt--aaattctcttgctgcttcaaattgtgattcata-ttcacggagattaacttatactattgccaccaccgttatgtttggacag
                                              |||||||||||||||  ||| || || || || ||||||||| ||||||||||||| |||||||| |  |||||||||||||| || || ||| ||||||| |  | ||||| |    | ||  | |||  ||  ||   | | | |    ||    | ||| | |||||      ||    ||  |  || ||  ||    ||||||   |||
---------------------------------------------AGCAAACAGAGTTGCTGTTGTAGTTGCAAATGAGTGGAAAGATGCTAATGACAAAGTAATGCCTGTCAAACAGTGGCTTGAAGAGCGCAGGTTTCTGCAGgtaaa-gatgatatacttctgtttgttttttgaagctcatctacggttgtccatgcaaagtcacacttcacatcatatattcaatttttatggcatgacaa--atgtttcttcag

upper sequence: AT1G14840.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os06g14080.1 (Oryza sativa), 5'ss of exon 7
AGAGAGGAAAATCCTTGAACGGGAATTGGCCCGTGCGAAGGTAAATGCAAACAGAGTTGCTACTGTTGTAGCTAACGAATGGAAAGATTCTAATGACAAAgtgatgcctgtaaggcagtggcttgaagaacgtagatttttgcaggtcattgctgata-catatta-atatttaaattctcttgctgcttcaaatt--gtgattcatattcacggagattaacttatactattgccaccaccgttatgtttggacag---------------------------------------
                                              |||||||| ||||||  ||| || || ||||| ||||||||||||||||||||||| ||||| || |  |||||||||||||| || |||||  |||||||    | ||||  || ||||  | ||    || |     | | |  | ||   ||| |  |||| ||  || ||  ||    |  ||   |  ||  || |  | | |  |                                       
---------------------------------------------AGCAAACAGGGTTGCTGTTGTGGTTGCCAACGAGTGGAAAGATTCTAATGACAAAGTCATGCCAGTTAAACAGTGGCTTGAAGAGCGCAGATTCCTGCAGgttg--gatgatctcacattatgtcttctctttgttggagtacatgcacttctatgaattttattgactaagtttg-ctggcccctttctgaatactatttt--tcgaatggcattctgcaataacttttcttttaaaaatattttgacag

upper sequence: AT1G14840.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G008556_T01 (Zea mays), 5'ss of exon 7
AGAGAGGAAAATCCTTGAACGGGAATTGGCCCGTGCGAAGGTAAATGCAAACAGAGTTGCTACTGTTGTAGCTAACGAATGGAAAGATTCTAATGACAAAgtgatgcctgtaaggcagtggcttgaagaacgtagatttttgcaggtcattgctgatacatattaatatttaaattctcttgctgcttcaaattgtgattcatattcacggagattaacttatactattgccaccaccgttatgtttggacag------------------------------------------------------
                                              ||||||||||||||| ||||||| ||||| || |||||||||||||||||||| |||||||| || |  |||||||||||||| ||||| || || |||||    | || |  | | ||  ||||   ||  |    | |||    |||| |||||  |   |  | ||   | ||| || | |  |  | |   ||||     | |                                                      
---------------------------------------------AGCAAACAGAGTTGCTTCTGTTGTTGCTAATGAGTGGAAAGATTCTAATGACAAGGTGATGCCAGTTAAACAGTGGCTTGAAGAGCGTAGGTTCTTCCAGgttg--gatggt-taaactagcattttctttaccaatgtacttttttttgt-attcaactctgcacaaatatgcatattctttggtga--aacaaaatgtaccacctgctggacatggttcttttcttgagtatcatatgtgatactttcttgtttctacag

upper sequence: AT1G14840.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G039325_T01 (Zea mays), 5'ss of exon 7
AGAGAGGAAAATCCTTGAACGGGAATTGGCCCGTGCGAAGGTAAATGCAAACAGAGTTGCTACTGTTGTAGCTAACGAATGGAAAGATTCTAATGACAAAgtgatgcctgtaaggcagtggcttgaagaacgtagatttttgcaggtcattgctgatacatattaatatttaaattctcttgctgcttcaaattgtg--attcatattcacggagattaacttatactattgccaccaccgttatgtttggacag----------------------------------------------------------------
                                              |||||||| |||||| ||||||| || || || |||||||||||||||||||| |||||||| || |  |||||||||||||| ||||| || |||||||||  || || |  | | |    |||    |   || |   |  |  ||||   || ||  |   |  | ||   | ||| || | |  |  | |   ||||     | |                                                                
---------------------------------------------AGCAAACAGGGTTGCTTCTGTTGTGGCCAATGAGTGGAAAGATTCTAATGACAAGGTGATGCCAGTTAAACAGTGGCTTGAAGAGCGTAGGTTCTTGCAGgtc--tgatggt-taaactggccttt----ttctttaccaatgtactttgtagcatccacctctgcaaaaatatgcatattctttggtga--aacaaaatgtaccagctgttggtccgttgttggacacgtttctttgttgaatatcatttgtgataatttcttgtttttacag

upper sequence: AT1G14840.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM5G832989_T01 (Zea mays), 5'ss of exon 7
AGAGAGGAAAATCCTTGAACGGGAATTGGCCCGTGCGAAGGTAAATGCAAACAGAGTTGCTACTGTTGTAGCTAACGAATGGAAAGATTCTAATGACAAAgtgatgcctgtaaggcagtggcttgaagaacgtagatttttgcaggtcat-tgctgatacatattaatatttaaattctcttgctgcttcaaattgtgattcatattcacggagattaacttatactattgccaccaccgttatgtttggacag
                                             |||||| || ||||||  ||| || || ||||| ||||||||| ||||||||||||| |||||||| |  |||||||| ||||| || || ||  |||||||    |||| |  |   || ||||   |   |     | | |   | | | |  | | || ||       |||  |   | |     ||  |   | |          
---------------------------------------------TGCAAATAGGGTTGCTGTTGTGGTCGCAAACGAGTGGAAAGATGCTAATGACAAAGTAATGCCTGTTAAACAGTGGCTGGAAGAGCGAAGGTTCCTGCAGgtaggatgctaaagctgtttcatat---agggcatccacagttatcagtagagtgtaaaatgcattagttctaatgttgtcgacaaaaactgcttctgtag--------

upper sequence: AT1G14840.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA07G26540.1 (Glycine max), 5'ss of exon 7
AGAGAGGAAAATCCTTGAACGGGAATTGGCCCGTGCGAAGGTAAATGCAAACAGAGTTGCTACTGTTGTAGCTAACGAATGGAAAGATTCTAATGACAAAgtgatgcctgtaaggcagtggcttgaagaacgtagatttttgcaggtcattgctgatacatattaatatttaaattctcttgctgcttcaaattgtgattcatattcacggagat----taacttatactattgccaccaccgttatgtttggacag------------------------------------------
                                              ||||||||||| |||  ||| || || || |||||||||||| ||||||| |||||||||||||| |  |||||||||||||||||| |||| |||||||| ||   |  |     ||| | |   |||||   ||    |     ||| | |    | |  |     |    |  |||||| |  | |    |   |||  ||   |||                                           
---------------------------------------------AGCAAACAGAGTAGCTGTTGTGGTTGCAAATGAATGGAAAGATGCTAATGATAAAGTGATGCCTGTCAAACAGTGGCTTGAAGAACGTCGATTCTTGCAGgtaat-atttttttgctttactctgccaattcatctgaatttagtggttgagttcttgacttccatgactctttttgcttatatttcttcttttat-attaatttcccacatttggcttcgctttccgcttattattaaattgcattcttatag

upper sequence: AT1G14840.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA05G34560.1 (Glycine max), 5'ss of exon 7
AGAGAGGAAAATCCTTGAACGGGAATTGGCCCGTGCGAAGGTAAATGCAAACAGAGTTGCTACTGTTGTAGCTAACGAATGGAAAGATTCTAATGACAAAgtgatgcctgtaaggcagtggcttgaagaacgtagatttttgcaggtcattgctgatacatattaat----atttaaattctcttgctgcttcaaattgtgattcatattcacggagattaacttatact--attgccaccaccgttatgtttggacag----------------
                                              ||||||||||| |||   || || || || |||||||||||| |||||||||||||||||||||| |  || ||||||||||||||  ||||||||||||| | |  |  | |  |||  |    ||||||| | || || |  ||   |  || ||  || |||  | |  ||  |||   ||  | ||       | || |||||  ||                  
---------------------------------------------AGCAAACAGAGTAGCTGTAGTGGTTGCAAATGAATGGAAAGATGCTAATGACAAAGTGATGCCTGTGAAACAATGGCTTGAAGAACGACGATTTTTGCAGgtgaatattatttctgattcctttggatttaaactttcgtggttttttttaaagt-atatatcttcctgcat-ttggcttccccttcaatgtggttttcattttgtttttaccaaactacactcttatag

upper sequence: AT1G14840.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G05100.1 (Glycine max), 5'ss of exon 7
AGAGAGGAAAATCCTTGAACGGGAATTGGCCCGTGCGAAGGTAAATGCAAACAGAGTTGCTACTGTTGTAGCTAACGAATGGAAAGATTCTAATGACAAAgtgatgcctgtaaggcagtggcttgaagaacgtagatttttgcaggt------cattgctgatacatat-----taatatttaaattctcttgctgcttcaaattgtg-attcatattcacgga---gattaacttatactattgccaccaccgttatgtttggacag-----------
                                              ||||||||||| |||   || || || || |||||||||||| |||||||||||||||||||||| |  || ||||||||||||||  |||| ||||||||      |||| ||||| | | |     |||| |||     || ||  |   | |||    | ||  || |||  | |   | ||  | |  | ||  |   |||   || |        |            
---------------------------------------------AGCAAACAGAGTAGCTGTAGTGGTTGCAAATGAATGGAAAGATGCTAATGACAAAGTGATGCCTGTGAAACAATGGCTTGAAGAACGACGATTCTTGCAGgtggatatcatttctgattcctttggatttaatcttttgtgcctttttttttataaaaaaaagtatatatcttcttgcatttggtttcccttcaatacggtttccatttttttaccaaactacacttttattag

upper sequence: AT1G14840.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA02G09390.1 (Glycine max), 5'ss of exon 7
AGAGAGGAAAATCCTTGAACGGGAATTGGCCCGTGCGAAGGTAAATGCAAACAGAGTTGCTACTGTTGTAGCTAACGAATGGAAAGATTCTAATGACAAAgtgatgcctgtaaggcagtggcttgaagaacgtagatttttgcaggtcat-----------------tgctgatacatattaatat-------------ttaaattctcttgctgcttcaaattgtgattcatattcacggagattaacttatactattgccaccacc--gttatgtttggacag-----------
                                              ||||||||||| |||  ||| || || || |||||||||||| | ||||| |||||||||||||| |  || ||||||||||||||  |||| |||||||| ||                 |||  || ||| | ||| |             || |||||  || ||  |||   || |  ||| | || |  |  |||  |     ||     | |   |   ||||  ||  |  |           
---------------------------------------------AGCAAACAGAGTAGCTGTTGTGGTTGCAAATGAATGGAAAGATGCCAATGATAAAGTGATGCCTGTCAAACAATGGCTTGAAGAACGCCGATTCTTGCAGgtaatatttttttgttttactctgccaattcatctgaatttagtggttgagtttttgaattccattactctttctgcttatatttcttttttatagtaatttcccgcatctggcttcgctttccacttattattaaattgaattcttatag

upper sequence: AT1G14840.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 7
AGAGAGGAAAATCCTTGAACGGGAATTGGCCCGTGCGAAGGTAAATGCAAACAGAGTTGCTACTGTTGTAGCTAACGAATGGAAAGATTCTAATGACAAAgtgatgcctgtaaggcagtggcttgaagaacgtagatttttgcaggtcattgct----gatacatatt-----aatatttaaattctc--ttgctgcttcaaattgtgattcatattcacggagattaacttatactattgccaccaccgttatgtttggacag---------------
                                             ||||||||| || ||    |||||||| || |||||||||||| |||||||||| |||||||| ||||  || ||||| || |||||  |||| ||||| || | | ||      | | ||||     || | || |  | |   || ||| |||   || |  || ||  | || | | ||  ||| |    || ||||      ||  | |   ||                
---------------------------------------------TGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaatactctgaagttcttattgtttcaaaacttgagctattatttactgtttc--tttttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgttaccaaaacctcttgttacag