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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACAACTGATGAAGAATATTTGCGTGGCTATTGTTTCTCAGCAGCATATACTATATCAATGCTTCATGATAGTCTTGGTATTGCTCTTGATGATGAAAGgtaaaatttactgcacaaattcaagaacattgtaagattaatcaaatgtgggtttttttggacaaagatataaacaaaaactatacgtttgtttttgtttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G14240.4
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G14240.4 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv01s0026g02490.t01 (Vitis vinifera), 5'ss of exon 7
CAACAACTGATGAAGAATATTTGCGTGGCTATTGTTTCTCAGCAGCATATACTATATCAATGCTTCATGATAGTCTTGGTATTGCTCTTGATGATGAAAGgtaaaatttactgcacaaattcaagaacattgtaagattaatcaaatgtgggtttttttgga-caaagatataaacaaa-aactatacgtttgtttttgtttgcag
   ||    |||| ||| ||||      |||||| |||||  ||||||||| | |  |  | ||||||||||||||||| |||||| | ||||||||||||||  | ||  | ||  |||      ||  ||   |||  | ||||     | | ||| | | ||    ||| ||  || || |  |  | | | | | |   || 
ATTCATTCAATGAGGAAGATTTATTGCACTATTGCTTCTCTTCAGCATATATTGTGGCTTTTCTTCATGATAGTCTTGGAATTGCTTTGGATGATGAAAGgtattacttctttcaacaatatttccaccatg---gat--accaaaatcaagctatttagaatcatttttatcaatgaataagttcatatatatatatatacaca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19740690|gb|AU226043.1|AU226043
EST:     ACTATATCAATGCTTCATGATAGTCTTGGTA-TGCTCTTGATGATGAAAG                         TATCACGTATGCAATTAAAGCAGGAGAAAAACACATACCACTAGATTGGGC
genomic: ACTATATCAATGCTTCATGATAGTCTTGGTATTGCTCTTGATGATGAAAGgtaaaattta ... ttgtttgcagTATCACGTATGCAAGTAAAGCAGGAGAAAAACACATACCACTAGATTGGGC