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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACATTTAAGGACGAGAATTTGCTTCGGTATTGCTTCTCATCAGCATATATTATCTCAATGCTTCATGATAGTCTTGGTGTTGCTCTTGATGATGAAAGgtaaatgttattgcacaagttcaagatcaatcaatgttggttttctgtgacaaagatataaacaaaaagtcgaacctatgcttgttttgtctacag

Basic information

species Arabidopsis thaliana
transcript AT1G14230.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G14230.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G05750.1 (Glycine max), 5'ss of exon 7
CAACATTTAAGGACGAGAATTTGCTTCGGTATTGCTTCTCATCAGCATATATTATCTCAATGCTTCATGATAGTCTTGGTGTTGCTCTTGATGATGAAAGgtaaatgttattgcacaagttcaagatcaatcaatgttggttttctgtgacaaagatataaaca---aaaagtcgaacctatgcttgttttgtctacag--
   |   | | || ||  |||| ||||||||||||||||| |||||||| ||| |  |  ||||||| || ||||||||  ||||| | |||||||| |||||    |  |||      ||  |    | |  |  |   ||     ||| ||   || |  ||   || | |    ||  | | |   |     | |   
TCTCCCATGATGAGGAAGATTTACTTCGGTATTGCTTCTCTTCAGCATACATTGTTGCTCTGCTTCACGACAGTCTTGGAATTGCTTTGGATGATGAGAGgtattcctgcttgtttttcttttaaggtatttga-atatattgaggttgataacattacaggcattgaacatttaggccctttcgtacctgaaacaaacat

upper sequence: AT1G14230.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv01s0026g02490.t01 (Vitis vinifera), 5'ss of exon 7
CAACATTTAAGGACGAGAATTTGCTTCGGTATTGCTTCTCATCAGCATATATTATCTCAATGCTTCATGATAGTCTTGGTGTTGCTCTTGATGATGAAAGgtaaatgttattgcacaagttcaagatcaatcaatgttggttttctgtgacaaaga----tataaacaaaaagtcgaacctatgcttgttt-tgtctacag
   |||| || || ||  ||||  | |  ||||||||||| |||||||||||| |  |  | |||||||||||||||||  ||||| | ||||||||||||||    || || ||  | |       | ||  ||       |   |  |   |||    | |  |  ||      |    ||   | | | | |  ||| 
ATTCATTCAATGAGGAAGATTTATTGCACTATTGCTTCTCTTCAGCATATATTGTGGCTTTTCTTCATGATAGTCTTGGAATTGCTTTGGATGATGAAAGgtattacttctttcaacaatatttccaccatggataccaaaatcaagctatttagaatcatttttatcaatgaataagttcatatatatatatatacaca-