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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCCAACCTGGATAGCAATGCAAAAATGTGGCGCCTAGTTGCTGACCTTATGAATGATATTGgtatgtaaaagttagttgtcacatcacacttgatactaattgcctgtatttggttctcagttgaatgactacaagctttgttgcttttattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G13770.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13770.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os03g11500.1 (Oryza sativa), 5'ss of exon 7
GGTTCCAACCTGGATAGCAATGCAAAAATGTGGCGCCTAGTTGCTGACCTTATGAATGATATTGgtatgtaaaagttagttgtcacatcacacttgatactaattgcctgtatttgg--ttctcagttgaatgac-tacaagc-tttgttgcttttattgcag------
|| || ||||| ||||||||||| |||||||||||||||||||| ||| ||||||||||  ||||||  || |   ||  | |||     | ||   || |||||   || ||  ||   ||| | || || | | | ||| | |||| |  || ||||  ||      
GGATCTAACCTTGATAGCAATGCTAAAATGTGGCGCCTAGTTGCAGACTTTATGAATGACCTTGgta-atatagtcta--tatcagtaatcgct--gtattaattctttgaatgcgggcgtctaatttaaaggtcctgcaatcgtttggtatttatattcaagactaag

upper sequence: AT1G13770.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM5G846548_T01 (Zea mays), 5'ss of exon 7
GGTTCCAACCTGGATAGCAATGCAAAAATGTGGCGCCTAGTTGCTGACCTTATGAATGATATTGgtatgtaaaagttagttgtcacatcacacttgatactaattgcctgtatttggttctcagttgaatgactacaagctttgttgcttttattgcag-----------------
|| || || || ||||||||||| ||||||||||| |||||||| ||| ||||||||||  ||||||    |   | | |||  ||    ||||  || | | |||  |   ||   ||| |  |   ||| | ||||   || || | || ||  ||                  
GGATCTAATCTTGATAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTTATGAATGACCTTGgta----atgttcaattgaaac----cactaaattc-agttgttttctttcatttccc--tcccatggc-acaattgttattacattcatgtcaagctagacagttctgttt

upper sequence: AT1G13770.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G07190.1 (Glycine max), 5'ss of exon 7
GGTTCCAACCTGGATAGCAATGCAAAAATGTGGCGCCTAGTTGCTGACCTTATGAATGATATTGgta-----tgtaaaagttagttgtcacatcacacttgatacta----attgcctgtatttggttctcagttgaatgac-tacaagctttgt--tgcttttattgcag
|| || || || |||||||||||||||||||||||  | ||||| || |||||||||||  | ||||     | | | | | |  | |  ||  | |    |||  |    | ||||  | | |   |        |||    ||  |  ||||   |||||||       
GGATCAAATCTTGATAGCAATGCAAAAATGTGGCGATTGGTTGCAGATCTTATGAATGACCTAGgtagattctttcacattcatctttttcaaaaaataaaataaaattatactgccattttctaccttcagtcccaatagtgtatcaaatttgaaatgctttt-------

upper sequence: AT1G13770.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv01s0011g00500.t01 (Vitis vinifera), 5'ss of exon 7
GGTTCCAACCTGGATAGCAATGCAAAAATGTGGCGCCTAGTTGCTGACCTTATGAATGATATTGgtatgtaaaagttagttgtcacatcacacttgatactaattgcctgtatttggttc------tcagttgaatgactacaagctttgttgcttttattgcag--
|| || |||||||| |||||||| |||||||||||  | ||||| || || ||||||||| |||||||| |    ||  || | |  | | | ||||   | |   |  ||  ||  ||       ||| ||| |||| || |   || ||  |  ||   | ||  
GGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTGATGAATGATCTTGgtatgcactcattttttcttattttagatttgacttttaaaacaagtgattaatttgaatcatcatttggatgattaaa---ttggtaaccctttagggagtt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876024|gb|AU236855.1|AU236855
EST:     TAGCAATGCAAAAATGTGGCGCCTAGTTGCTGACCTTATGAATGATATTG                         GAATGCTAATGGACCTTCTTTCTCCTTTGTTTCCATCTGCCTTTATCGTTG
genomic: TAGCAATGCAAAAATGTGGCGCCTAGTTGCTGACCTTATGAATGATATTGgtatgtaaaa ... tttattgcagGAATGCTAATGGACCTTCTTTCTCCTTTGTTTCCATCTGCCTTTATCGTTG