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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGTGTCTTCTCTACCGTGGTGCGGGCAAAAGACACAAAAGCTGAACTAGGTGAACCTGAGGAAGTGGCTATAAAAATTATTCGGAACAATGAGACAATgtaagtggtcttctctaggaccggacaaattttatcaaaattcttatcaagtgatgtttgatttatcttcctaagagttgtgaatgtctcactatcatatcacgttttgtgtag

Basic information

species Arabidopsis thaliana
transcript AT1G13350.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13350.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G147811_T01 (Zea mays), 5'ss of exon 7
AAGGTGTCTTCTCTACCGTGGTGCGGGCAAAAGACACAAAAGCTGAACTAGGTGAACCTGAGGAAGTGGCTATAAAAATTATTCGGAACAATGAGACAATgtaagtggtcttctctaggaccggacaaattttatcaaaattcttatcaagtgatgtttgatttatcttcctaagagttgtgaatgtctcactatcatatcacgttttgtgtag
| ||||| ||||| || || ||||||||||||||    |||||       | ||| ||||| ||||| || || ||||||||||| ||||||||||||||||||||     || ||||    |      || |     ||||  ||  | |  |          |   |  |   |  | ||| | |                           
AGGGTGTGTTCTCAACAGTTGTGCGGGCAAAAGATCTTAAAGCGAGTAAGGATGATCCTGAAGAAGTTGCCATCAAAATTATTCGCAACAATGAGACAATgtaagttaagctccctagagatg------ttctcctgcaatttctactatggaaaacaaataggaatgtaattcaatatttgattatacag-----------------------

upper sequence: AT1G13350.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G151236_T03 (Zea mays), 5'ss of exon 6
AAGGTGTCTTCTCTACCGTGGTGCGGGCAAAAGACACAAAAGCTGAACTAGGTGAACCTGAGGAAGTGGCTATAAAAATTATTCGGAACAATGAGACAATgtaa-gtggtcttctctaggaccggacaaattt--tatcaaaattcttatcaagtgatgtttgatttatcttcctaagagttgtgaatgtctcactatcatatcacgttttgtgtag
| ||||| ||||| |  || ||||||||||||||    |||||      || ||| ||||| ||||| ||||| ||||||||||| ||||| ||||||||||||  |  |||||     || | |  |  |||  |||  ||| |   ||       |  || | |  ||      | ||                                     
AGGGTGTGTTCTCAAAAGTCGTGCGGGCAAAAGATCTTAAAGCGAGTAAAGATGATCCTGAAGAAGTTGCTATCAAAATTATTCGCAACAAGGAGACAATgtaatataatcttcctagagatctgcaatttttagtatggaaaattaaataggactgtaattcaatattcgattatacag-------------------------------------

upper sequence: AT1G13350.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ38506 (Selaginella moellendorffii), 5'ss of exon 6
AAGGTGTCTTCTCTACCGTGGTGCGGGCAAAAGACACAAAAGCTGAACTAGGTGAACCTGAGGAAGTGGCTATAAAAATTATTCGGAACAATGAGACAATgtaagtggtcttctctaggaccggacaaattttatcaaaattcttatcaagtgatgtttgatttatcttcctaagagttgtgaatgtctcactatcatatcacgttttgtgtag
  ||||| ||||| || |||||||| ||||  ||||| |||||||  | ||| ||||| || ||||||||||| |||||||| || | ||| || || |||||||||   || |||    ||     |  || ||   |    |  |   ||                                                              
GGGGTGTATTCTCGACTGTGGTGCGTGCAAGGGACACGAAAGCTGGTCGAGGAGAACCGGAAGAAGTGGCTATCAAAATTATCCGAAGCAACGAAACTATgtaagtg---ttgtcttaagcctttttatcttcatttgatgcgtcttgttgtag------------------------------------------------------------