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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGTGTCTTCTCTACCGTGGTGCGGGCAAAAGACACAAAAGCTGAACTAGGTGAACCTGAGGAAGTGGCTATAAAAATTATTCGGAACAATGAGACAATgtaagtggtcttctctaggaccggacaaattttatcaaaattcttatcaagtgatgtttgatttatcttcctaagagttgtgaatgtctcactatcatatcacgttttgtgtag

Basic information

species Arabidopsis thaliana
transcript AT1G13350.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13350.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G147811_T01 (Zea mays), 5'ss of exon 7
AAGGTGTCTTCTCTACCGTGGTGCGGGCAAAAGACACAAAAGCTGAACTAGGTGAACCTGAGGAAGTGGCTATAAAAATTATTCGGAACAATGAGACAATgtaagtggtcttctctaggaccggacaaattttatcaaaattcttatcaagtgatgtttgatttatcttcctaagagttgtgaatgtctcactatcatatcacgttttgtgtag
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AGGGTGTGTTCTCAACAGTTGTGCGGGCAAAAGATCTTAAAGCGAGTAAGGATGATCCTGAAGAAGTTGCCATCAAAATTATTCGCAACAATGAGACAATgtaagttaagctccctagagatg------ttctcctgcaatttctactatggaaaacaaataggaatgtaattcaatatttgattatacag-----------------------

upper sequence: AT1G13350.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G151236_T03 (Zea mays), 5'ss of exon 6
AAGGTGTCTTCTCTACCGTGGTGCGGGCAAAAGACACAAAAGCTGAACTAGGTGAACCTGAGGAAGTGGCTATAAAAATTATTCGGAACAATGAGACAATgtaa-gtggtcttctctaggaccggacaaattt--tatcaaaattcttatcaagtgatgtttgatttatcttcctaagagttgtgaatgtctcactatcatatcacgttttgtgtag
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AGGGTGTGTTCTCAAAAGTCGTGCGGGCAAAAGATCTTAAAGCGAGTAAAGATGATCCTGAAGAAGTTGCTATCAAAATTATTCGCAACAAGGAGACAATgtaatataatcttcctagagatctgcaatttttagtatggaaaattaaataggactgtaattcaatattcgattatacag-------------------------------------

upper sequence: AT1G13350.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ38506 (Selaginella moellendorffii), 5'ss of exon 6
AAGGTGTCTTCTCTACCGTGGTGCGGGCAAAAGACACAAAAGCTGAACTAGGTGAACCTGAGGAAGTGGCTATAAAAATTATTCGGAACAATGAGACAATgtaagtggtcttctctaggaccggacaaattttatcaaaattcttatcaagtgatgtttgatttatcttcctaagagttgtgaatgtctcactatcatatcacgttttgtgtag
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GGGGTGTATTCTCGACTGTGGTGCGTGCAAGGGACACGAAAGCTGGTCGAGGAGAACCGGAAGAAGTGGCTATCAAAATTATCCGAAGCAACGAAACTATgtaagtg---ttgtcttaagcctttttatcttcatttgatgcgtcttgttgtag------------------------------------------------------------