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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGATTCAAGACTGAGACCAGACCAAAGACACTTAGAAAACGGTGAATATGAGTCAGCAAATGCCGAGAAACTGAGACTTGAACAGTTACAGAGACAGgtacaaaatctataggagaatatgttaatcttgactatatacataattgtgcatgaccacaggactgaatatagaagagtgtgccgtttgtgtgttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G13170.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13170.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G156608_T03 (Zea mays), 5'ss of exon 2
AACAGATTCAAGACTGAGACCAGACCAAAGACACTTAGAAAACGGTGAATATGAGTCAGCAAATGCCGAGAAACTGAGACTTGAACAGTTACAGAGACAGgta--caaaatctataggagaat--atgttaatcttgactatatacataattgtgcatgaccacaggactgaatatagaaga-gtgtgccgtttgtgtgttgcag
 || |||||  |  |||||||||||||||| ||  | ||||| ||||||||||||   |||||| | |||||||| || ||||||||  | ||  | ||||||  ||| |  ||||   || |  |  |     ||     | |   |  |  |   | | ||  | | |||  | |   ||  |||   | |  | | ||    
TACTGATTCTCGTTTGAGACCAGACCAAAGGCATCTGGAAAATGGTGAATATGAGATGGCAAATTCAGAGAAACTTAGGCTTGAACAACTGCAACGGCAGgtaaccaacaattatatatgatttgacatggccttttgtcttgtgtctt-tcataggttatca-ggcaatgataacaattgacatgtcttgataatat-ttat--

upper sequence: AT1G13170.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA11G37650.1 (Glycine max), 5'ss of exon 7
AACAGATTCAAGACTGAGACCAGACCAAAGACACTTAGAAAACGGTGAATATGAGTCAGCAAATGCCGAGAAACTGAGACTTGAACAGTTACAGAGACAGgtacaaaatctataggagaata-tgttaatc--ttgactatatacataattg---tgcatgaccacagga----ctgaatatagaagagtgtgccgtttgtgtgttgcag--------------------------------------------------
||| || |||||  |||||||||| |||||||| |||||||| || |||||||||   |||||||| || ||||| |||||||||||||| |||||||||||| |  | | | |       | | || |||  | || | || |  | ||||   |      |  |||||    |    | |  |     ||  | ||    | || |                                                    
AACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAGgtaaattacccacaactctcgacttttgatccatggaatctagagtttattggaatatgctgcttcaggatgtcccattttttcatcttcgtaaccttatcttcttccgtctctaattataagactctttcaatgaacttatgcttgtttcatggttcag

upper sequence: AT1G13170.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA18G01590.1 (Glycine max), 5'ss of exon 7
AACAGATTCAAGACTGAGACCAGACCAAAGACACTTAGAAAACGGTGAATATGAGTCAGCAAATGCCGAGAAACTGAGACTTGAACAGTTACAGAGACAGgtacaaaatctataggaga-atatgttaatcttgactatataca--taattgtgcatgaccacaggactgaatatag--aagagtgtgccgtttgtgtgttgcag----------
||| || |||||  |||||||||| |||||||| |||||||| || |||||||||   |||||||| |||||||| |||||||||||||| ||||||| |||| |  | | | |      |  | || |||     ||| || |  | ||||       | | | | |    | |    |    |||  | | ||  || | ||           
AACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaattacccacaactctcaacttttgatccatggtatctagagtttattggaatatgctatacgccaagcttttcttattgttgtaacttatgcttgattcataataattcag