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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTACTCTGAAATGATCGGAAACGTCATGATTGATGCAAGGTCGACTGGAAAGTACTATCATTgtaagtaaatgtttaacaaaatttcttgaagttgcatcatttctattgtgccctatttgtttacatgctgtatcacattttcattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G12000.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124888447|gb|EH967349.1|EH967349
EST:     GATCGGAAACGTCATGATTGATGCAAGGTCGACTGGAAAGTACTATCATT                         TTGTAAGACTTATGGGTCGTGCTGCTTCCCACATTACG
genomic: GATCGGAAACGTCATGATTGATGCAAGGTCGACTGGAAAGTACTATCATTgtaagtaaat ... ttcattgcagTTGTAAGACTTATGGGTCGTGCTGCTTCCCACATTACG
EST: gi|116438054|gb|EG480646.1|EG480646
EST:     GATCGGAAACGTCATGATTGATGCAAGGTCGACTGGAAAGTACTATCATT                         TTGTAAGACTTATGGGTCGTGCTGCTTCCCACATTACGCTTGAGTGTGCTT
genomic: GATCGGAAACGTCATGATTGATGCAAGGTCGACTGGAAAGTACTATCATTgtaagtaaat ... ttcattgcagTTGTAAGACTTATGGGTCGTGCTGCTTCCCACATTACGCTTGAGTGTGCTT