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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGACACACATTCTCCCTATACTACTCAAGAACAGAGTAATCCATTTTGTCGGATTCGGAAACCGCTTAGCCTTTGATCCATTACCGTTTGAGTTACAGgtagacattttttttactctacgcgcttctatatatctctgattatagcttctttatctaaacctttttggaagtag

Basic information

species Arabidopsis thaliana
transcript AT1G11990.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G11990.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv10s0116g00130.t01 (Vitis vinifera), 5'ss of exon 10
TATGACACACATTCTCCCTATACTACTCAAGAACAGAGTAATCCATTTTGTCGGATTCGGAAACCGCTTAGCCTTTGATCCATTACCGTTTGAGTTACAGgtagacattttttttactctacgcgcttctatatatctctgattatagcttctttatctaaacctttttggaagtag------------------------------------------------------------
|  ||   | ||||| |||||||||||  | || |||||  |||||||||| ||||| ||||| || || || ||||| ||| |||| |||||||| |||||| |  | |  | |    ||     |||     |  |||  ||  ||   ||      | |  ||| ||  | ||                                                             
TCGGAAGAATATTCTTCCTATACTACTTCAAAAGAGAGTCGTCCATTTTGTTGGATTTGGAAATCGTTTGGCATTTGACCCAATACCATTTGAGTTGCAGgtaaatctatagtctttgatatattattccggcaaagtct--ttggaggagctaatagcataggtttatgagattatcaacctcgcttggttttcttagtttttatattgctttcctaattgcgggacttcatctag