Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTAACAATTTGGCTTCTCGCCGTTATTTACTTCATATCGGGTGTTCCAGGAGGCTATGTGTTATGGTATCGGCCTCTCTACCGTGCCTTCAGgttcttatttttcatccctagacactaattttgtgtaggaaagtgttcgtagtatttttatttttccatatatccatattcaatgtttctctttgtgttgaattcctgcag

Basic information

species Arabidopsis thaliana
transcript AT1G11180.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G11180.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os01g57220.1 (Oryza sativa), 5'ss of exon 7
GAGTAACAATTTGGCTTCTCGCCGTTATTTACTTCATATCGGGTGTTCCAGGAGGCTATGTGTTATGGTATCGGCCTCTCTACCGTGCCTTCAGgttcttatttttcatccctagacactaattttgtgtaggaaagtgttcgtagtatttttatttttccatatatccatattcaatgtttctctttgtgttgaattcctgcag
| || |  || ||| | || ||| |||| ||||| ||||| ||||| || |||| |||||||||||||||||| || || |||  |||  | ||||| | | | | | |   |      || || ||   |  |     ||| |  ||| |||    |    |||    | | |  ||||| |                      
GTGTTATGATCTGGTTGCTAGCCATTATCTACTTTATATCTGGTGTACCTGGAGCCTATGTGTTATGGTATCGCCCCCTTTACAATGCGATGAGgttgtgaatatacttgtgtttttgttatttctgcacactat----ttcttcttatatttgacatagtgtattgttacaatgtatgttgcag--------------------

upper sequence: AT1G11180.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G100809_T01 (Zea mays), 5'ss of exon 7
GAGTAACAATTTGGCTTCTCGCCGTTATTTACTTCATATCGGGTGTTCCAGGAGGCTATGTGTTATGGTATCGGCCTCTCTACCGTGCCTTCAGgtt-cttattt---ttcatccct--agacactaattttgtg-taggaaagtgttcgtagtatttttatttttccatatatccatattcaatgtttctctttgtgttgaattcctgcag
| || |  || ||||| || ||| |||| ||||||||||| ||||| || || |  ||||||||||||||||||||||| ||   |||  | |||||  |||| |   | |||| ||  | | | || ||||          | ||||| | ||  |  ||| | |   | |||     || ||||| |   || |                
GTGTTATGATCTGGCTGCTTGCCATTATCTACTTCATATCTGGTGTGCCCGGGGCTTATGTGTTATGGTATCGGCCTCTTTATAATGCAATGAGgttgtttatatggatccatctcttaatatattactttttcaacgtttcaatgttccttgtgatcatatatcttgttttat-----ttgaatgtctgctttag----------------