Sequence
atgc intronic sequence ATGC exonic sequenceGGGGATAGCTGATGCCATTTTAGACCTTGTGAGCAGTGGGACAACCCTTAAAGAGAACAACTTAAAAGAAATTGAAGGAGGGGTTGTGCTGGAAAGTCAGgtatgacatgaagatctttggaattgattattttttcgcacttggcaaccggtgtaccaatttttttttctttttacgtactatcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G09795.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G09795.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA03G33360.1 (Glycine max), 5'ss of exon 7
GGGGATAGCTGATGCCATTTTAGACCTTGTGAGCAGTGGGACAACCCTTAAAGAGAACAACTTAAAAGAAATTGAAGGAGGGGTTGTGCTGGAAAGTCAGgt-atga--catgaagatctttggaattgattatt------------ttttcgcacttggcaa-----ccggtgtaccaatttttttttctttttacgtactatcag-----------------------------------
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GGGGATAGCTGATGCTATCTTGGACCTTGTAAGTAGTGGGACCACACTGAGAGAAAACAACTTGAAGGAAATCAAAGGTGGAGTTGTTTTGGAAAGCCAGgttatcaattgttaacttttctgaccttgactatcaccatttgttggtttttcaattaaataaaaaagtaggcatgggaaacctgctctgtatt-atgcattgtcgggttctgtctcactctggcaattgaatgctcttcag
upper sequence: AT1G09795.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv12s0035g00760.t01 (Vitis vinifera), 5'ss of exon 7
GGGGATAGCTGATGCCATTTTAGACCTTGTGAGCAGTGGGACAACCCTTAAAGAGAACAACTTAAAAGAAATTGAAGGAGGGGTTGTGCTGGAAAGTCAGgtatgacatgaagatctttggaattgattattttt----tcgcacttggcaaccggt-----gtaccaattttt---ttttctttttacgtactatcag------------------------
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GGGAATAGCTGATGCTATTTTGGATCTTGTGAGTAGTGGGACAACCCTCAGGGAAAACAACTTAAAAGAAATTGAAGGTGGAGTTGTCTTGGAAAGCCAGgtaaaccttacaagcttttggtctcatgttcttgagaaatgctatttgatgagggtctttaggcatctggttttacattctgctttcatctgttctcatcgtaccccaaatattgttcttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125070300|gb|EL135769.1|EL135769EST: AAGAGAACAACTTAAAAGAAATTGAAGGAGGGGTTGTGCTGGAAAGTCAG GCTGCACTAGTGGCGAGTAGAAGGGCATTGA
genomic: AAGAGAACAACTTAAAAGAAATTGAAGGAGGGGTTGTGCTGGAAAGTCAGgtatgacatg ... gtactatcagGCTGCACTAGTGGCGAGTAGAAGGGCATTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGGATAGCTGATGCCATTTTAGACCTTGTGAGCAGTGGGACAACCCTTAAAGAGAACAACTTAAAAGAAATTGAAGGAGGGGTTGTGCTGGAAAGTCAGgtatgacatgaagatctttggaattgattattttttcgcacttggcaaccggtgtaccaatttttttttctttttacgtactatcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA