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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGGAGACATTGAATTTCCTCTGCCATTTGGAAGGGTCCTCAGTTCTACAGAGAACTTCATCCATGGTTTAGATGAGAAGgtttaagcatccagcttttctaaaaacaccacttttgtgactcagacaggaaagacttgaaagtaatgttactgaccattcatgtctgtgtgtgtgtgtgtgtttgttacttattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G09430.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502490|gb|HO208030.1|HO208030
EST:     GAAGGGTCCTCAGTTCTACAGAGAACTTCATCCATGGTTTAGATGAGAAG                         ACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCCGCATTTGG
genomic: GAAGGGTCCTCAGTTCTACAGAGAACTTCATCCATGGTTTAGATGAGAAGgtttaagcat ... cttattgcagACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCCGCATTTGG
EST: gi|124797849|gb|EH887528.1|EH887528
EST:     GAAGGGTCCTCAGTTCTACAGAGAACTTCATCCATGGTTTAGATGAGAAG                         ACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAG
genomic: GAAGGGTCCTCAGTTCTACAGAGAACTTCATCCATGGTTTAGATGAGAAGgtttaagcat ... cttattgcagACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAG
EST: gi|125101220|gb|EL156403.1|EL156403
EST:     GAAGGGTCTTCAGTTCTACAGAGAACTTCATCCATGGTTTAGATGAGAAG                         ACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCCG
genomic: GAAGGGTCCTCAGTTCTACAGAGAACTTCATCCATGGTTTAGATGAGAAGgtttaagcat ... cttattgcagACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCCG