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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCCCGTCGAAGAATGGTTTTTCCACCGTCTAAAGGCAGGTCGCCCAATCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcacactttctctaattcttgagcttcctttcatgttcagaaaactcattgttatagggacccactgactgaaactcagctctgatcaatcttgaagagtattgatcaataacatcaaatcattctgtaatttcag

Basic information

species Arabidopsis thaliana
transcript AT1G09340.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09340.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G165655_T04 (Zea mays), 5'ss of exon 7
CAACCCCGTCGAAGAATGGTTTTTCCACCGTCTAAAGGCAGGTCGCCCAATCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcacactttctctaattcttgagcttcctttcatgttcagaaaactcattgttatagggacccactg-actgaaactcagctctgatcaatcttgaagagtattgatcaataacatcaaatcattctgtaatttcag
|||||||||||| || |||||||||||||| || ||||| || ||||| |||||  | ||   | | || |  |||||| | || ||||| || || |||||      |    ||    ||  |  |||| |  || ||    |   || |  ||   ||      |||||  |||   |                                                              
CAACCCCGTCGAGGAGTGGTTTTTCCACCGCCTCAAGGCCGGCCGCCCCATCCCCATCCCCGGCGCCGGCAACCAGATCACGCAGCTCGGCCATGTCAAGgttgtcgtcgtcgtcagccatattc-agctgc--ttaattaataattaattggtttcgattcctctccactctactagcag-------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125043151|gb|EL115420.1|EL115420
EST:     TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG                         GACTTGGCAACA
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACA
EST: gi|124983903|gb|EL056605.1|EL056605
EST:     TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG                         GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: gi|125046472|gb|EL118741.1|EL118741
EST:     GATCTCACAACTCGGTCACGTTAAG                         GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
genomic: GATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: gi|86080119|gb|DR375876.1|DR375876
EST:     TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG                         GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: gi|116482238|gb|EG524830.1|EG524830
EST:     TCCCGGTTCCAAATTTTGGGATACAGATCTCACAACTCGGTCACGTTAAG                         GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: gi|125315392|gb|EL329477.1|EL329477
EST:     TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG                         GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTA
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTA
EST: gi|124818141|gb|EH903007.1|EH903007
EST:     CCCGGTTCCAAACTCTGGGATACAGATCTCTACAACTCGGTCACGTTAAG                         GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
genomic: CCCGGTTCCAAACTCTGGGATACAGATCTC-ACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: gi|125258838|gb|EL272923.1|EL272923
EST:     TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG                         GACTTGGCAACAGCCTTTCTCAACGTG
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTG
EST: gi|124900632|gb|EH975250.1|EH975250
EST:     GGTCACGTTAAG                         GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
genomic: GGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: gi|124802210|gb|EH891215.1|EH891215
EST:     TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG                         GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAA
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAA
EST: gi|124918260|gb|EH992116.1|EH992116
EST:     TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG                         GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: gi|124820891|gb|EH905757.1|EH905757
EST:     TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG                         GACTTGGCAACAGCCTTTCTCAA
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAA
EST: gi|125187634|gb|EL202588.1|EL202588
EST:     TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG                         GACTTGGCAACAGCCTTTCTCAACGTG
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTG
EST: gi|86083439|gb|DR379198.1|DR379198
EST:     ACAACTCGGTCACGTTAAG                         GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
genomic: ACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: gi|124945686|gb|EL021672.1|EL021672
EST:     ACAGATCTCACAACTCGGTCACGTTAAG                         GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
genomic: ACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: gi|124957523|gb|EL032350.1|EL032350
EST:     TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG                         GACTTGGCAACAGCCTTTCTCAACGTG
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTG
EST: gi|124850207|gb|EH934644.1|EH934644
EST:     TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG                         GACTTGGCAACAGCCTTTCTCAA
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAA