Sequence
atgc intronic sequence ATGC exonic sequenceCGAAGTTAGTGGAGACCGTGAGGTACAAAGGACAATGTTGGAGCTGCTCAACCAGCTTGATGGATTCAGCAGCGATGATCGCATTAAGgttgttacccctcatattacccctgcaaatgtctatttatttagtgaaaggcatgaaaaactcataattttacaaacttag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G09100.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G09100.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 7
CGAAGTTAGTGGAGACCGTGAGGTACAAAGGACAATGTTGGAGCTGCTCAACCAGCTTGATGGATTCAGCAGCGATGATCGCATTAAGgttgttacccctcatattaccc-----ctgcaaatgtctatttatttagtgaaaggcatgaaaaactcataattttacaaact-tag------------------------------------------------------------------------------------------------------------
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TGAAGTTAGTGGTGATAGAGAAGTGCAAAGGACAATGTTGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattcaacctcaaacctattagttattacagtcttgatgctttgtctcaggttttgttcagttgcaggttgagaaggtataaagttacctctattgatcatgatatgagagatagatgaactgatattttttcccaatgtcttatttaatatctggtgtactaaacgtttgattgttgtgtggcttacag
upper sequence: AT1G09100.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G38030.1 (Glycine max), 5'ss of exon 7
CGAAGTTAGTGGAGACCGTGAGGTACAAAGGACAATGTTGGAGCTGCTCAACCAGCTTGATGGATTCAGCAGCGATGATCGCATTAAGgttgttaccc--ctcatattacccctgcaaatgtctatttatttagtgaaaggcatgaaaaactcataattttacaaacttag------------------
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TGAAGTAAGTGGAGACAGAGAGGTCCAACGGACAATGTTAGAATTGCTTAATCAGCTTGATGGTTTTAGCAGTGATGACCGGATTAAGgtttgtctttaattcttattatctatatttttgtctgattgatgag-ataagcttcaaagtatttttctgtctttgggtaaagcattatagtttatatttt
upper sequence: AT1G09100.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 7
CGAAGTTAGTGGAGACCGTGAGGTACAAAGGACAATGTTGGAGCTGCTCAACCAGCTTGATGGATTCAGCAGCGATGATCGCATTAAGgttgttacccctcatattacccctgcaaatgtctatttatttagtgaaaggcatgaaaaactcataat----tttacaaacttag-----------------
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TGAAGTAAGTGGAGACAGGGAGGTACAGCGAACAATGTTAGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGGATTAAGgtt-tgacttctattcttatctgtgtctcttttt-tctgattgatgtgataaacagtgagcttaaaaagatgtttactgtctttgggggttatgcatacata
upper sequence: AT1G09100.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 7
CGAAGTTAGTGGAGACCGTGAGGTACAAAGGACAATGTTGGAGCTGCTCAACCAGCTTGATGGATTCAGCAGCGATGATCGCATTAAGgtt--gttacccctcatatt-acccctgcaaatgtctat------ttatttagtgaaaggcatgaaaaactcataattttacaaacttag----------
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TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgttttctaaattcattactgcgcttttttccacctcattttctggctcaagtccccatgaattcatttgtgttggattctgctatccactgc
upper sequence: AT1G09100.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S340_7V6.1 (Physcomitrella patens), 5'ss of exon 7
CGAAGTTAGTGGAGACCGTGAGGTACAAAGGACAATGTTGGAGCTGCTCAACCAGCTTGATGGATTCAGCAGCGATGATCGCATTAAGgttg----ttacccctcat-attacccctgcaaatgtc---tatttatttagtgaaaggcatgaaaaactcataattttacaaacttag----------------------------------------------------------------------------------
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TGAAGTAAGTGGAGATCGTGAAGTGCAGAGAACTATGCTGGAGTTGCTTAATCAGCTGGATGGATTCAGCAGTGATGAGCGCATTAAAgtgagccttgaaatatcattattatttctccattcttcacataatgatttctcaaatgctctattatttgcttgtctataatcagtcaaggttgaagtcctagtcgtgggtgtagccgtgcgggctgaggaggaaattttaggaactaattcttgaatgtttcatgaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124990657|gb|EL062926.1|EL062926EST: ATTCAGCAGCGATGATCGCATTAAG GTTATTGCAGCGACAAATCGTGCTGATATACTAGAATCCTGCCCTTATGCG
genomic: ATTCAGCAGCGATGATCGCATTAAGgttgttaccc ... acaaacttagGTTATTGCAGCGACAAATCGTGCTGATATACTAGA-TCCTGCCCTTATGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGAAGTTAGTGGAGACCGTGAGGTACAAAGGACAATGTTGGAGCTGCTCAACCAGCTTGATGGATTCAGCAGCGATGATCGCATTAAGgttgttacccctcatattacccctgcaaatgtctatttatttagtgaaaggcatgaaaaactcataattttacaaacttag
- - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA