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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTACGATGACTGGTGCAAAATCTATGAAAGGGACACCATATTGGATGGCTCCGGAAGTTATTCTTCAAACTGGACATAGCTTgtaagaaaccaagcgtgctcgtaaatgcaaaattagatgttttgtaactgatactcatacaattgtggctattaattgtagtcctggtgacttatgtcccatatttttgatttctcacaaacctgtggctattgttctcag

Basic information

species Arabidopsis thaliana
transcript AT1G09000.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09000.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os08g32600.1 (Oryza sativa), 5'ss of exon 7
GCTACGATGACTGGTGCAAAATCTATGAAAGGGACACCATATTGGATGGCTCCGGAAGTTATTCTTCAAACTGGACATAGCTTgtaagaaaccaagcgtgctcgtaaatgcaaaattagatgttttgtaactgatactcatacaattgtggctattaattgtagtcctggtgacttatgtcccatatttttgatttctcacaaacctgtggctattgttctcag
        |||   ||| ||  | |||||||||||||||||||||||||| || ||||| ||| ||   | ||| |||  ||||||||    |||||    || | |   ||  |||| | |||    ||||| |  |    | ||  |   |  |  |||| |||||  |||||    ||  || | ||| |                               
------GCGACCACTGCCAAGACAATGAAAGGGACACCATATTGGATGGCCCCAGAAGTAATTGTTGGGAGTGGGCATGACTTgtaagtggacaagc----tctttatctcatcattata-gtt----aactgctcgttgctcgatccttagtgatgcttgtggtcctc-tgactc---tcttatttctttaagaa----------------------------

upper sequence: AT1G09000.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 7
GCTACGATGACTGGTGCAAAATCTATGAAAGGGACACCATATTGGATGGCTCCGGAAGTTATTCTTCAAACTGGACATAGCTTgtaagaa-accaagcgtgctcgtaaatgcaaaattagatgttttgtaac-tgatactcatacaattgtggctattaattgtagtcctggtgacttatgtcccatatttttgatttctcacaaacctgtggctattgttctcag
|| || ||  ||||||| || || |||||||| || ||||||||||||||||| ||||||||||| || ||||| ||| ||||||||| | |  || | |   |     |  | |  ||  |   ||  ||  || | ||| ||   ||     | ||     |  |           ||||  | |                                       
GCAACCATTTCTGGTGCCAAGTCCATGAAAGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATTGCTTgtaaggacattaaccatctactc---tatagacatattttacttacaatgtgctgctc-tatttttaatattctttgacatgattaaaaaactggatgtttctt---------------------------------------

upper sequence: AT1G09000.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA03G39760.1 (Glycine max), 5'ss of exon 7
GCTACGATGACTGGTGCAAAATCTATGAAAGGGACACCATATTGGATGGCTCCGGAAGTTATTCTTCAAACTGGACATAGCTTgtaagaaaccaagcgtgctcgtaaatgcaaaattagatgttttgtaactgatactcatacaattgtggctattaattgtagtcctggtgacttatgtcccatatttttgatttctcacaaacctgtggctattgttctcag
|| || ||  ||||||| || || ||||| || || ||||||||||||||||| ||||||||||| || ||||| ||||||||||||| |      |   ||  |  |  || | ||  ||  | ||   ||     |   | | |  | |  || | |   |   ||||    || |     | |                                      
GCAACCATTTCTGGTGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATAGCTTgtaaggacattgaccctctactgtagacatatttt-ataatatgctgctctgtttttaatattcattgacatgattaaaaa--ctggaagtttcttctggaca--------------------------------------

upper sequence: AT1G09000.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv14s0128g00430.t01 (Vitis vinifera), 5'ss of exon 7
GCTACGATGACTGGTGCAAAATCTATGAAAGGGACACCATATTGGATGGCTCCGGAAGTTATTCTTCAAACTGGACATAGCTTgtaagaaaccaagcgtgctcgtaaatgcaaaattagatgttttgtaactgatactcatacaattgtggctattaattgtagtcctggtgacttatgtcccatatttttgatttctcacaaacctgtggctattgttctcag
||||| ||  | ||||| || || |||||||| || || |||||||||||||||||||| ||||| || || || ||||||||||||| |    | |   |   ||      ||||||  | |||        ||  | ||   ||| |   ||||   | ||||   | |||  ||| ||| | ||| ||||  |     |                      
GCTACCATTTCAGGTGCCAAGTCCATGAAAGGCACCCCGTATTGGATGGCTCCGGAAGTCATTCTCCAGACAGGCCATAGCTTgtaaggactatatcaaacctcta------aaattatgttttt--------atttttattttattttatttatt---tatagttaagatga--tatatccaaaattgttgaacttggcta----------------------