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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCATCTGACATGGTTTTGGCAGATGATAATTTCAGCACCATTGTTGCAGCTGTAGGTGAAGGCAGGTCCATCTATAACAACATGAAGGCCTTCATCAGgtgagtcttctactatcacatatatatatatatgcctattcgtattgatggcttgagttatacatactaagcctatatatatgactatgatgaataaaag

Basic information

species Arabidopsis thaliana
transcript AT1G07810.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G07810.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os05g02940.1 (Oryza sativa), 5'ss of exon 2
AGGCATCTGACATGGTTTTGGCAGATGATAATTTCAGCACCATTGTTGCAGCTGTAGGTGAAGGCAGGTCCATCTATAACAACATGAAGGCCTTCATCAGgtgagtcttctactatcacatatatatatatatgccta---ttcgtattgatggcttgagttatacatactaagcctatatatatgactatgatgaataaaag
|||| |||||||||||| | || ||||| ||||| || ||||||||||| || || |||||||| ||||| || || ||||||||||| || |||||||||| |||  |||   | |   | | | |   | | |  |   || |  |  |    |    || |   | |||       | | |  |  | ||  |||     
AGGCCTCTGACATGGTTCTTGCTGATGACAATTTTAGTACCATTGTTGCGGCAGTTGGTGAAGGAAGGTCTATTTACAACAACATGAAAGCTTTCATCAGgttagtgatctcagagcctgtttttgttgttgttctcactttttgcttcaacacttgcttttgtcacttctattttggcagaaacaaaca-gactaatgct--

upper sequence: AT1G07810.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os03g17310.1 (Oryza sativa), 5'ss of exon 6
AGGCATCTGACATGGTTTTGGCAGATGATAATTTCAGCACCATTGTTGCAGCTGTAGGTGAAGGCAGGTCCATCTATAACAACATGAAGGCCTTCATCAGgtgagtcttctactatcacatatatatatatatgcctattcgtattgatggct--tgagtta-tacatactaagcctatatatatga-ctatgatgaataaaag
| || || || |||||| | ||||||||||| ||||| || || || |||||||| |||||||| ||||| |||||  |||| |||||||| || || ||||   || |    |  ||  |||   ||    |  ||     | ||     ||    ||| | || | |    | |  |  || ||  ||||     ||   ||
AAGCTTCAGATATGGTTCTTGCAGATGATAACTTCAGTACAATAGTCGCAGCTGTTGGTGAAGGGAGGTCAATCTACGACAATATGAAGGCATTTATAAGgtacatcatta--tgccagctatggctaaccctttcttgctttgttagcatctgacaagtcaataaaaatgctgtcagttaatgtgggctatatgttattgcag

upper sequence: AT1G07810.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G056014_T01 (Zea mays), 5'ss of exon 6
AGGCATCTGACATGGTTTTGGCAGATGATAATTTCAGCACCATTGTTGCAGCTGTAGGTGAAGGCAGGTCCATCTATAACAACATGAAGGCCTTCATCAGgtgagt----------cttctactatcacatatatatatatatgcctattcgtattgatggcttgagttat--acatactaagcctatatatatgactatgatgaataaaag
|||| ||||||||||| ||||| || || ||||| |||||||| ||| | || || |||||||| || || ||||| ||||||||||| || ||||| ||||  ||          |||  | |||     | |  |     | |   | | | | |    |||   || |   ||| ||   | |   | | |  ||  | ||    |   
AGGCGTCTGACATGGTGTTGGCTGACGACAATTTTAGCACCATAGTTTCTGCAGTCGGTGAAGGAAGATCGATCTACAACAACATGAAAGCTTTCATAAGgtctgtgctgagcttgctttgattattgttcacactttgtagtactcgtacttttcgcccccttcccttgtgggcattcttgacgtccctgtcttcctcggctgccgcag--

upper sequence: AT1G07810.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G141704_T01 (Zea mays), 5'ss of exon 2
AGGCATCTGACATGGTTTTGGCAGATGATAATTTCAGCACCATTGTTGCAGCTGTAGGTGAAGGCAGGTCCATCTATAACAACATGAAGGCCTTCATCAGgtgagtcttctactatcacatatatatatatatgcctattcgta-ttgatggcttgagttatacatactaagcctatatatatgactatgatgaataaaag
| || || || |||||  | ||||||||||| ||||| || || || ||||| || |||||||| ||||| || || |||||||||||||| || || ||||  || ||    ||  |  |||    | |  |   | | | || ||| ||| |  | | | | || || || |     || || |||| |||||    ||
AAGCTTCAGATATGGTACTTGCAGATGATAACTTCAGTACTATAGTCGCAGCAGTTGGTGAAGGGAGGTCTATTTACAACAACATGAAGGCTTTTATTAGgtctgtttttggata--agctatggccaaacttttttgtgcataattgttggttaaattaaaatatgctgagtc-----atgtg-ctat-atgaactgcag

upper sequence: AT1G07810.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA19G35960.1 (Glycine max), 5'ss of exon 6
AGGCATCTGACATGGTTTTGGCAGATGATAATTTCAGCACCATTGTTGCAGCTGTAGGTGAAGGCAGGTCCATCTATAACAACATGAAGGCCTTCATCAGgtgagtctt-ctactatcacata-tatatatatatgcctattcgtattgatggcttgagttatacatactaagcctatatatatgactatgatgaataaaag
| || || || ||||| ||||||||||||||||| ||  | |||||||| ||||| ||||| || || || ||||| || || ||||||||||| ||||||||| ||||  |    | | |||   |||  | |   | |      |   |      | | |   ||| |  || |||||   |  || |  | |||    |
AAGCTTCAGATATGGTGTTGGCAGATGATAATTTTAGTTCAATTGTTGCTGCTGTTGGTGAGGGTAGATCTATCTACAATAATATGAAGGCCTTTATCAGgtgattcttattgtcgttaaataacttatccacaattccacataagtcactattgcaaataaaggataatttgc-tatatcactttctctc-tcaatctttg

upper sequence: AT1G07810.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA03G33240.1 (Glycine max), 5'ss of exon 6
AGGCATCTGACATGGTTTTGGCAGATGATAATTTCAGCACCATTGTTGCAGCTGTAGGTGAAGGCAGGTCCATCTATAACAACATGAAGGCCTTCATCAGgtgagtctt-ctactatcacata-tatatatatatgcctattcgtattgatggcttgagttatacatactaagcctatatatatgactatgatgaataaaag
| || || || ||||| ||||||||||||||||| ||  | |||||||| ||||| ||||| || || || ||||| || || |||||||| || ||||||||| ||||  |    | | |||   |||  | |   | |          |      | | |   ||| | ||| |||||   |  || |  | |||    |
AAGCTTCAGATATGGTGTTGGCAGATGATAATTTTAGTTCAATTGTTGCTGCTGTTGGTGAGGGTAGATCTATCTACAATAATATGAAGGCTTTTATCAGgtgattcttattgtcgttaaataacttatccacaattccacataagccactattgcaaataaaggataattagc-tatatcactttctctc-tcaatctttg

upper sequence: AT1G07810.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv06s0004g03900.t01 (Vitis vinifera), 5'ss of exon 6
AGGCATCTGACATGGTTTTGGCAGATGATAATTTCAGCACCATTGTTGCAGCTGTAGGTGAAGGCAGGTCCATCTATAACAACATGAAGGCCTTCATCAGgtgagtcttctactatcacatatatatatatatgcctattcgtattgatggcttgagttatacatactaagcctatatatatgacta-tgatgaataaaag
| || ||||||||||| ||||||||||||||||| | ||| || ||||| ||||| ||||||||||| ||||| || ||||| |||||||| || |||||||  |  |  |     || |   | ||  |  | |||  | |  ||      ||||  |||| |||| |   |     || |||  | || | | | | | 
AAGCCTCTGACATGGTCTTGGCAGATGATAATTTTAACACAATAGTTGCTGCTGTTGGTGAAGGCAGATCCATTTACAACAATATGAAGGCTTTTATCAGgtttgattcttttgtgcataagaaaattcagctacctggtaggcttacaaaattgacatata-atacaattacctagaatgtgaagagtgttcactgagaa

upper sequence: AT1G07810.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EDP06981 (Chlamydomonas reinhardtii), 5'ss of exon 20
AGGCATCTGACATGGTTTTGGCAGATGATAATTTCAGCACCATTGTTGCAGCTGTAGGTGAAGGCAGGTCCATCTATAACAACATGAAGGCCTTCATCAGgtgagtcttctactatcacatatatata-tatatgcctattcgtattgatggcttgagttatacatactaagcctatatatatgactatgatgaataaaag
||||    ||||||||  |||| || || || |||||| |||| || || || || |  || ||| |  ||||||| ||||||||||||||||||||| ||||||           || |   |     | |  |   |  |     || ||   | ||| |   | | |   || || |   ||       |       |
AGGCCAGCGACATGGTGCTGGCGGACGACAACTTCAGCTCCATCGTGGCGGCGGTGGCGGAGGGCCGCGCCATCTACAACAACATGAAGGCCTTCATCCGgtgagggaggggagggcagagggaagggctgtggggagagccaagcggaggggaggtgttgtttgttcgagaact-taaaagcgagggctgagggcggggg

upper sequence: AT1G07810.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S78_99V6.2 (Physcomitrella patens), 5'ss of exon 8
AGGCATCTGACATGGTTTTGGCAGATGATAATTTCAGCACCATTGTTGCAGCTGTAGGTGAAGGCAGGTCCATCTATAACAACATGAAGGCCTTCATCAGgtgagtcttctactatcacatatatat-atatatgcctattcgtattgatggcttgagttatacatactaagcctatatatatgactatgatgaataaaag
||||| | ||||||||  | |||||||||||||| ||||| ||||| |||||||| || |||||  | || || || || || ||||||||||| |||||||| ||  | |  | | | | ||   |  |||  | ||   | ||||   |  || |    |  || |||| |  || | |    |||             
AGGCAGCAGACATGGTGCTTGCAGATGATAATTTTAGCACGATTGTGGCAGCTGTTGGAGAAGGTCGTTCGATATACAATAATATGAAGGCCTTTATCAGgtgggtaatttgatttaataaatgagttgtattaggctgagcttatta--gaattaaaaattgaattctaacctgatttgtgaacctacag----------

upper sequence: AT1G07810.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S248_28V6.1 (Physcomitrella patens), 5'ss of exon 6
AGGCATCTGACATGGTTTTGGCAGATGATAATTTCAGCACCATTGTTGCAGCTGTAGGTGAAGGCAGGTCCATCTATAACAACATGAAGGCCTTCATCAGgtgagtcttctactatcacatatatatatatatgcctattcgtattgatggcttgagttatacatactaagcctatatatatgactatgatgaataaaag
||||| | ||||||||  | |||||||| ||||| ||||| ||||| ||||| || || |||||  | || || || |||||||||||||||||||| ||||| ||  | |  ||  |   ||   | | |  |   | |  | | ||    ||||||   | |   |   |  |  | | ||  | |   |        
AGGCAGCCGACATGGTGCTTGCAGATGACAATTTTAGCACTATTGTGGCAGCCGTTGGAGAAGGTCGTTCTATATACAACAACATGAAGGCCTTCATTAGgtgcgtgattttatactaaggatgattttttgagtggagtattttggaaa--ttgagtaccagaagtttgactgaagt-tgtggatctacag--------