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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCTTGCCTGCTCGAGGAAAGACTTTTACTGCAGCAAAGTTGACAAGATATCTACGCTGGTTGGGACATGATACTAAACATTTTAATGTTGGAAAGgttagctattttgttgcaatgattcttgattttttttagcttatcctgtcattacgcgacccttgttggaaagattgactcaaacattgctccgtttctttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G07110.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM5G824405_T01 (Zea mays), 5'ss of exon 7
GTTGGCTTGCCTGCTCGAGGAAAGACTTTTACTGCAGCAAAGTTGACAAGATATCTACGCTGGTTGGGACATGATACTAAACATTTTAATGTTGGAAAGgttagctattttgttgcaatgattcttgattttttttagcttat-cctgtcattacgcgacccttgttggaaagattgactcaaacattgctccgtttctttgcag
|||||  | || |||||||| ||||| ||||| ||||| ||  | ||||||||||| || ||||| || ||||| || ||||| || |||||||||||||| |    ||   ||    | ||| |  |       | || | |   | |  |  ||| |  | |||| |  |  |||  |   |                     
GTTGGGCTACCAGCTCGAGGTAAGACCTTTACAGCAGCTAAACTTACAAGATATCTCCGATGGTTAGGTCATGAAACAAAACACTTCAATGTTGGAAAGgtgataatttagcttaagctaattttgtagagaaaattgcatgtgtgtatggtatcgctaatcatgtttgctattttgttttctag--------------------

upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA14G37520.3 (Glycine max), 5'ss of exon 7
GTTGGCTTGCCTGCTCGAGGAAAGACTTTTACTGCAGCAAAGTTGACAAGATATCTACGCTGGTTGGGACATGATACTAAACATTTTAATGTTGGAAAGgttagctattttgttg--caatgattcttgatttttt-ttagcttatcctgtcattacgcgacccttgt----tggaaagattgactcaaacattgctccgtttctttgcag---
||  | ||||| |||||||| |||||||  |||||||| ||  | ||||||||||| || ||||| || ||| |||| ||||| || |||||||| ||||||    |  || |||    ||  |||||  |  |   | | ||| |  | || | |||  |  |  |     ||  ||| |||| |  ||||    |  |||||  ||  |   
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttcacattcttgactcattcttcttagtaatcaatcatcttgttgtatc-taacgaaaggcaggaaatatgtcaagtttgaatttaacacacttatgtttcaatgttgcag

upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 7
GTTGGCTTGCCTGCTCGAGGAAAGACTTTTACTGCAGCAAAGTTGACAAGATATCTACGCTGGTTGGGACATGATACTAAACATTTTAATGTTGGAAAGgttagctattttgttg--caatgattcttgattttttttag-cttat-cctgtcattacgcgacccttgttggaaagattgactcaaacattgctc-cgtttctttgcag---
||  | ||||| |||||||| |||||||  |||||||| ||  | ||||||||||| || ||||| || ||| |||| ||||| || |||||||| ||||||       || |||    ||  |||||  |  |   ||| ||| |  ||      |  |      | | |  ||| |||| |  ||||   ||   |||||  ||  |   
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttctcattcttgactcattcttcttagtaatcagtagtcttgtatctaatggaagacaggaaatat-gtcaagtttgaatttaacaaaacttatgtttcaatgttgcag

upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
GTTGGCTTGCCTGCTCGAGGAAAGACTTTTACTGCAGCAAAGTTGACAAGATATCTACGCTGGTTGGGACATGATACTAAACATTTTAATGTTGGAAAGgttagctattttgttgcaatgattcttgattttttttagcttatcctgtcattacgcgacccttgttggaaagattgactcaaacattgctccgtttctttgcag
||||||||||| |||||||| || |||||||||||||| ||  | ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||||| |  ||| || ||  | | |||| | |    |     || ||| |   | |  | ||   ||| |   |   |||  |  ||||                   
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaaagttattcatcacagct-----ctaatcattgaagtgag-gaagattgatatgacttttggttgtaacag------------------

upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S414_24V6.1 (Physcomitrella patens), 5'ss of exon 7
GTTGGCTTGCCTGCTCGAGGAAAGACTTTTACTGCAGCAAAGTTGACAAGATATCTACGCTGGTTGGGACATGATACTAAACATTTTAATGTTGGAAAGgttagctattttgttgcaatgattcttgatttttttt-----agcttatcctgtc--attacgcgacccttgttggaaagattgactcaaacattgctccg--tttctttgcag-----------------------
||||| || ||||| ||||| ||||| ||||| |||||||| ||||| ||||||||  | ||| | || |||||||||||||| || ||||||||||| || |||| | || | ||| | |  |  |   ||||          |     |||   ||     ||    |||||       |     |||  || | | |   |  ||  | |                       
GTTGGGTTACCTGCACGAGGCAAGACGTTTACGGCAGCAAAATTGACGAGATATCTTAGGTGGCTAGGCCATGATACTAAACACTTCAATGTTGGAAAAgtaagct-tattctagcatttagccacgggcttttcctataggattcgcaatgttggatcttatgaagggtgttgtttccggtcctctaaatgttacgcagggctatttgactgacttctttgttgtgatgaactag

upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S235_92V6.1 (Physcomitrella patens), 5'ss of exon 6
GTTGGCTTGCCTGCTCGAGGAAAGACTTTTACTGCAGCAAAGTTGACAAGATATCTACGCTGGTTGGGACATGATACTAAACATTTTAATGTTGGAAAGgttagctattttgttgcaatgattcttgattttttttagct-tatcctgtcattacgcgacccttgttggaaagattgactcaaacattgctccgtttctttgcag
|||||| | ||||||||||| ||||||||||| ||||| ||| |||| ||||||||  | ||| | || |||||||| ||||| || |||||||||||||| ||||    |  |    | |||  |      |   ||   |||  ||   ||   | |   |    || |   |        || | | || | |  || |   
GTTGGCCTACCTGCTCGAGGGAAGACTTTTACAGCAGCTAAGCTGACGAGATATCTCAGGTGGCTTGGCCATGATACCAAACACTTCAATGTTGGAAAGgtaagct----tagtctgctcattagtagacagtgaaagtagtattttgagctttaactattgtgagggggacagtcattgtctacttggttctggtgtttagt--

upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ22544 (Selaginella moellendorffii), 5'ss of exon 2
GTTGGCTTGCCTGCTCGAGGAAAGACTTTTACTGCAGCAAAGTTGACAAGATATCTACGCTGGTTGGGACATGATACTAAACATTTTAATGTTGGAAAGgttagctattttgttgcaatgattcttgattttttttagcttatcctgtcattacgcgacccttgttggaaagattgactcaaacattgctccgtttctttgcag
||||||||||||||  |||| || || |||||||| || |||||||| |||||  |||| ||| ||||||||||||| || || || || |||||||||||    | ||    |   |||||   |  ||  |   | || | | |  || ||    | | | |  |                                     
GTTGGCTTGCCTGCGAGAGGGAAAACGTTTACTGCCGCGAAGTTGACGAGATACTTACGTTGGCTGGGACATGATACCAAGCACTTCAACGTTGGAAAGgtaccgtcttcatctctgatgatagctt-ttcgtgccaactgagctt-ccactatttcatcgt-gcag-------------------------------------

upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ11749 (Selaginella moellendorffii), 5'ss of exon 2
GTTGGCTTGCCTGCTCGAGGAAAGACTTTTACTGCAGCAAAGTTGACAAGATATCTACGCTGGTTGGGACATGATACTAAACATTTTAATGTTGGAAAGgttagctattttgttgcaatgattcttgattttttttagcttatcctgtcattacgcgacccttgttggaaagattgactcaaacattgctccgtttctttgcag
||||||||||||||  |||| || || |||||||| || |||||||| |||||  |||| ||| ||||||||||||| || || || || |||||||||||    | ||    |   |||||   |  |||  |      |   ||  || ||    | | | |  |                                     
GTTGGCTTGCCTGCGAGAGGGAAAACGTTTACTGCCGCGAAGTTGACGAGATACTTACGTTGGCTGGGACATGATACCAAGCACTTCAACGTTGGAAAGgtaccgtcttcatctctgatgatagct--tttcgtgccaaatgagcttccactatttcatcgt-gcag-------------------------------------