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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGACAAAGATGTGTGGGTGATGAACGTTGTCTCTCCCGACGGTCCCAACACTCTAAAACTGATCTACGACCGTGGTTTAATCGGAACAAATCATAACTGgtacacacccgaaacctgaaaatcgaaaacattctctcacttgtcacactagttcatattttcaccattctttttttttgtttccggttttaatttag

Basic information

species Arabidopsis thaliana
transcript AT1G04430.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083562|gb|DR379321.1|DR379321
EST:     ACTCTAAAACTGATCTACGACCGTGGTTTAATCGGAACAAATCATAACTG                         GTGTGAGGCTTTCTCTACATATCCTCGAACATACGATCTGTTGCACGCGTG
genomic: ACTCTAAAACTGATCTACGACCGTGGTTTAATCGGAACAAATCATAACTGgtacacaccc ... tttaatttagGTGTGAGGCTTTCTCTACATATCCTCGAACATACGATCTGTTGCACGCGTG
EST: gi|124867644|gb|EH952081.1|EH952081
EST:     CTACGACCGTGGTTTAATCGGAACAAATCATAACTG                         GTGTGAGGCTTTCTCTACATATCCTCGAACATACGATCTGTTGCACGCGTG
genomic: CTACGACCGTGGTTTAATCGGAACAAATCATAACTGgtacacaccc ... tttaatttagGTGTGAGGCTTTCTCTACATATCCTCGAACATACGATCTGTTGCACGCGTG