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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAGCATGTTGTGGATTCCTTTGCGGTCAAGGTTGTAATGGTGGATACCCAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAGgtaaattcactttttaactgcaaagaacatctattaatggcaaagtagttataaaacgtattcttgattctacag

Basic information

species Arabidopsis thaliana
transcript AT1G02305.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125112406|gb|EL163497.1|EL163497
EST:     CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAG                         TGTGATCCATA
genomic: CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAGgtaaattcac ... gattctacagTGTGATCCATA
EST: gi|86079522|gb|DR375279.1|DR375279
EST:     GTACTTTAAGCACCACGGTGTAGTCACTGAAGAG                         TGTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCC
genomic: GTACTTTAAGCACCACGGTGTAGTCACTGAAGAGgtaaattcac ... gattctacagTGTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCC
EST: gi|125276334|gb|EL290419.1|EL290419
EST:     CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAG                         TGTGATCCATACTTCGACAATACTGGTTGCTCG
genomic: CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAGgtaaattcac ... gattctacagTGTGATCCATACTTCGACAATACTGGTTGCTCG
EST: gi|125243039|gb|EL257124.1|EL257124
EST:     TCACTGAAGAG                         TGTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCC
genomic: TCACTGAAGAGgtaaattcac ... gattctacagTGTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCC
EST: gi|116429058|gb|EG471650.1|EG471650
EST:     CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAG                         TGTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCC
genomic: CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAGgtaaattcac ... gattctacagTGTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCC
EST: gi|163982798|gb|ES096716.1|ES096716
EST:     CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAG                         TGTGATCCATACTTCGACAATAC
genomic: CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAGgtaaattcac ... gattctacagTGTGATCCATACTTCGACAATAC
EST: gi|124856865|gb|EH941302.1|EH941302
EST:     CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAG                         TGTGATCCATACTTCGACAATAC
genomic: CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAGgtaaattcac ... gattctacagTGTGATCCATACTTCGACAATAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTAGCATGTTGTGGATTCCTTTGCGGTCAAGGTTGTAATGGTGGATACCCAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAGgtaaattcactttttaactgcaaagaacatctattaatggcaaagtagttataaaacgtattcttgattctacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA