1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTTAGCATGTTGTGGATTCCTTTGCGGTCAAGGTTGTAATGGTGGATACCCAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAGgtaaattcactttttaactgcaaagaacatctattaatggcaaagtagttataaaacgtattcttgattctacag
species | Arabidopsis thaliana |
transcript | AT1G02305.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAG TGTGATCCATAEST: gi|86079522|gb|DR375279.1|DR375279
genomic: CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAGgtaaattcac ... gattctacagTGTGATCCATA
EST: GTACTTTAAGCACCACGGTGTAGTCACTGAAGAG TGTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCCEST: gi|125276334|gb|EL290419.1|EL290419
genomic: GTACTTTAAGCACCACGGTGTAGTCACTGAAGAGgtaaattcac ... gattctacagTGTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCC
EST: CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAG TGTGATCCATACTTCGACAATACTGGTTGCTCGEST: gi|125243039|gb|EL257124.1|EL257124
genomic: CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAGgtaaattcac ... gattctacagTGTGATCCATACTTCGACAATACTGGTTGCTCG
EST: TCACTGAAGAG TGTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCCEST: gi|116429058|gb|EG471650.1|EG471650
genomic: TCACTGAAGAGgtaaattcac ... gattctacagTGTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCC
EST: CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAG TGTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCCEST: gi|163982798|gb|ES096716.1|ES096716
genomic: CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAGgtaaattcac ... gattctacagTGTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCC
EST: CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAG TGTGATCCATACTTCGACAATACEST: gi|124856865|gb|EH941302.1|EH941302
genomic: CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAGgtaaattcac ... gattctacagTGTGATCCATACTTCGACAATAC
EST: CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAG TGTGATCCATACTTCGACAATAC
genomic: CAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAGgtaaattcac ... gattctacagTGTGATCCATACTTCGACAATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTAGCATGTTGTGGATTCCTTTGCGGTCAAGGTTGTAATGGTGGATACCCAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAGgtaaattcactttttaactgcaaagaacatctattaatggcaaagtagttataaaacgtattcttgattctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA