Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGGTGTCGGCGCATACAGAATCAATCCTGACCCTCAAGACATTATGGCTGAGGTTTACAAGAATGGACCTGTCGAGGTTGCTTTTACCGTTTACGAGgtaatgaaaaagatttttgattgatcaaaccatattgattatatcttggtgaagtccacattttcatgtatctttttgttcttcag

Basic information

species Arabidopsis thaliana
transcript AT1G02300.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G02300.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G108849_T01 (Zea mays), 5'ss of exon 7
CTATGGTGTCGGCGCATACAGAATCAATCCTGACCCTCAAGACATTATGGCTGAGGTTTACAAGAATGGACCTGTCGAGGTTGCTTTTACCGTTTACGAGgtaatgaaaaagatttttgattga-----tcaaaccatattgattatat-cttggtgaagtccacattttcatgtatctttttgttcttcag----------------------------------------------------------------------
 |   |  | |  || |||||||| ||| | || || || ||||| ||||| ||||| ||||| ||||| ||||| || |||||||| || |||||||||||||||   |     ||||  | |     || |  ||| |||   | |   || ||| ||   | |  || ||| |    | ||   | |||                                                                      
TTTCAGCATTGATGCGTACAGAATAAATTCAGATCCACATGACATAATGGCAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtccagctgctttgtctcaagttctccatgcattttgtcaacagattttgtgtagctgagacgtt-atgaaggactatggggtgcagatactgctagtacttttagaggacaaacattccatacaaaaacttacaaagactattatctaaataaaag

upper sequence: AT1G02300.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G108849_T04 (Zea mays), 5'ss of exon 8
CTATGGTGTCGGCGCATACAGAATCAATCCTGACCCTCAAGACATTATGGCTGAGGTTTACAAGAATGGACCTGTCGAGGTTGCTTTTACCGTTTACGAGgtaatgaaaaagatttttgattga-----tcaaaccatattgattatat-cttggtgaagtccacattttcatgtatctttttgttcttcag---------
 |   |  | |  || |||||||| ||| | || || || ||||| ||||| ||||| ||||| ||||| ||||| || |||||||| || |||||||||||||||   |     ||||  | |     || |  ||| |||   | |   || ||| ||   | |  || ||| |    | ||   | |||         
TTTCAGCATTGATGCGTACAGAATAAATTCAGATCCACATGACATAATGGCAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtccagctgctttgtctcaagttctccatgcattttgtcaacagattttgtgtagctgagacgtt-atgaaggactatggggtgcagatactgcta

upper sequence: AT1G02300.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA03G38520.1 (Glycine max), 5'ss of exon 8
CTATGGTGTCGGCGCATACAGAATCAATCCTGACCCTCAAGACATTATGGCTGAGGTTTACAAGAATGGACCTGTCGAGGTTGCTTTTACCGTTTACGAGgtaatgaaaaagattt------ttgattg-atcaaaccatattgattatatcttggtgaagtccacattttcatgtatctttttgttcttcag-------
|||| ||||  | ||||||||| ||||  |||| || || || || ||||| || |||||||||||||| || || || ||||| ||||||||||| |||||||   ||||   ||      |  ||||    |||   |  ||    |  | |||| || | |  |    |    | | |  | ||    |        
CTATAGTGTTAGTGCATACAGAGTCAACTCTGATCCCCATGATATCATGGCGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAGgtaaatgaaaactcttacccactctattgcgataaatttttatgcaacttccatggtcaatttctgaaaacccaaaaccatcctatttaaaatttataat

upper sequence: AT1G02300.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv07s0005g02820.t01 (Vitis vinifera), 5'ss of exon 7
CTATGGTGTCGGCGCATACAGAATCAATCCTGACCCTCAAGACATTATGGCTGAGGTTTACAAGAATGGACCTGTCGAGGTTGCTTTTACCGTTTACGAGgtaatgaaaaagatttttgattgatcaaaccatattgattatatcttggtgaagtccacattttc------atgtatctttttgttcttcag---------
 ||||||    | ||||| ||||||| | |||| ||  |  | |||||||| || || ||||||||||||||||| |||||||| || || ||||| |||||||   |||  |  | |  |   | |     |||  |||  ||   | | | |  || || |||      |||     ||| |  ||  |          
TTATGGTCAAAGTGCATATAGAATCAGTTCTGATCCCTACCAAATTATGGCAGAAGTGTACAAGAATGGACCTGTTGAGGTTGCCTTCACTGTTTATGAGgtaaaagaaagcacctgttctgcgttat-tgttatgaatttgatgcagctaatgagcatatcttctgacgcatgaccaatttggcactctaagaccatggt