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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATTGACTTTGTTAAAGCCCTCTGCAAAGTTTCCATGGATGAGTTACGATCTCCATCTGATCCACGGGTCTTCAGCCTAACAAAGATTGTGGAAATAGCgtaaggatcaatcttttctttacgatatctgttttgtttttgctcactctctcttatttataccctgtttgttgtaatggcag

Basic information

species Arabidopsis thaliana
transcript AT1G01960.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os03g14260.2 (Oryza sativa), 5'ss of exon 7
TAATTGACTTTGTTAAAGCCCTCTGCAAAGTTTCCATGGATGAGTTACGATCTCCATCTGATCCACGGGTCTTCAGCCTAACAAAGATTGTGGAAATAGCgtaaggatcaatcttttctttacgatatctgttttgtttttgctcactctctcttatttataccctgtttgttgtaatggcag------------------------------
||||||| ||||| || || ||||| |||||||||||||| || || |||||| | |||||||||||||| || || || ||||||||||| || || ||||||| | ||    || || ||       ||   ||| ||| | ||  || |  | || ||    | | |  | ||  |||||                              
TAATTGATTTTGTAAAGGCTCTCTGTAAAGTTTCCATGGAGGAATTGCGATCTGCTTCTGATCCACGGGTTTTTAGTCTGACAAAGATTGTTGAGATTGCgtaagta-cagggcttcctatattcagattgcaatgtatttccccatacttttct-ttgatgtatt-tatagtatataggcagtatatgattgtgtttccctttctcttgtag

upper sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA09G40480.1 (Glycine max), 5'ss of exon 7
TAATTGACTTTGTTAAAGCCCTCTGCAAAGTTTCCATGGATGAGTTACGATCTCCATCTGATCCACGGGTCTTCAGCCTAACAAAGATTGTGGAAATAGCgtaaggatcaatcttttctttac-gatatctgttttgtttttgctcactctc---tcttatttataccct-gtttgttgtaat-ggcag-----------
|||| || |||||||| ||  | |||||||| |||||||| ||  |  |||||||||||||||||||||| |||||||| |||||||| || || || ||||| | || |   |||| |||||  ||   ||        |||||  |         |||||| | | |  || | | || ||  | |            
TAATAGATTTTGTTAAGGCTTTATGCAAAGTCTCCATGGAGGAACTCAGATCTCCATCTGATCCACGGGTGTTCAGCCTTACAAAGATAGTTGAGATTGCgtatgtattatctttttttttactaatgcatgccactcccttgcttccctctgaactttatttttgctcgagtctttggtgattagtataataaacaata

upper sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA18G45340.1 (Glycine max), 5'ss of exon 7
TAATTGACTTTGTTAAAGCCCTCTGCAAAGTTTCCATGGATGAGTTACGATCTCCATCTGATCCACGGGTCTTCAGCCTAACAAAGATTGTGGAAATAGCgtaaggatca---atcttttctttacgatatctgttttgtttttgctcactctctcttatttataccctgtttgttgtaatggcag--------------
|||| || |||||||| || || ||||| || |||||||| || ||  | ||||||||||||||||| || |||||||| ||||||||||| || || ||||| | || |   | ||   | ||   | ||      | |||||||   | ||||    |||      |  |  | ||  | |  |              
TAATAGATTTTGTTAAGGCTCTATGCAAGGTCTCCATGGAGGAATTGAGGTCTCCATCTGATCCACGTGTTTTCAGCCTTACAAAGATTGTTGAGATTGCgtatgtattactcacctaccccttcaaacatgctacctctttttgccttccctctgaatttttctttttcctcatggttcttggggttcattggttgggg

upper sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G34560.1 (Glycine max), 5'ss of exon 8
TAATTGACTTTGTTAAAGCCCTCTGCAAAGTTTCCATGGATGAGTTACGATCTCCATCTGATCCACGGGTCTTCAGCCTAACAAAGATTGTGGAAATAGCgtaaggatca---atcttttctttacgatatctgttttgtttttgctcactctct---cttatttataccctgtttgttgtaatggcag-----------
|||| || |||||||| || || ||||| || |||||||| || ||  | ||||||||||||||||| || |||||||| ||||||||||| || || ||||| | || |   | ||     ||   | ||      | |||||||   | ||||    || | | |  |||  | ||| |  |||              
TAATAGATTTTGTTAAGGCTCTATGCAAGGTCTCCATGGAGGAATTGAGGTCTCCATCTGATCCACGTGTTTTCAGCCTTACAAAGATTGTTGAGATTGCgtatgtattactcacctaccacttcaaacatgctacctctttttgccttccctctgaatttttctttttcctcatggttcttgtggttcattggttgggg

upper sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA03G02610.1 (Glycine max), 5'ss of exon 7
TAATTGACTTTGTTAAAGCCCTCTGCAAAGTTTCCATGGATGAGTTACGATCTCCATCTGATCCACGGGTCTTCAGCCTAACAAAGATTGTGGAAATAGCgtaaggatca---atcttttctttacgatatctgttttgtttttgctcactctctcttatttataccctgtttgttgtaatggcag--------------
|||| || |||||||| || || ||||| || |||||||| || ||  | ||||||||||||||||| || |||||||| |||||||| || || || ||||| | || |   | ||  |  ||   | |       | |||||||   | ||||    |||      |  |  | ||  | |  |              
TAATAGATTTTGTTAAGGCTCTATGCAAGGTCTCCATGGAGGAATTGAGGTCTCCATCTGATCCACGTGTTTTCAGCCTTACAAAGATGGTTGAGATTGCgtatgtattactcacctactacttcaaacaagctacctctttttgccttccctctgactttttctttttcctcatggttcttggggttcattggttgggg

upper sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 7
TAATTGACTTTGTTAAAGCCCTCTGCAAAGTTTCCATGGATGAGTTACGATCTCCATCTGATCCACGGGTCTTCAGCCTAACAAAGATTGTGGAAATAGCgtaaggatcaatct-----tttctttacgatatct----gttttgtttttgctcactctctcttatttataccctgtttgttgtaatggcag-----------------------------------------
|||||||||||||||| || |||||||| || || || || || || |||||| ||||||||||| | || || ||||| ||||||||||| || || ||||| | |||| |||     | ||||    || | |     |    | || |  |    | | |||||||||   |||  | ||  ||   |                                          
TAATTGACTTTGTTAAGGCTCTCTGCAAGGTCTCTATAGAAGAATTGCGATCTGCATCTGATCCAAGAGTTTTTAGCCTTACAAAGATTGTTGAGATTGCgtatgaatcattctcaatttgtcttgttcatgttttagcataccatattagtgcttcatttattatttatatt-tgtcagctgctattaaaaattttgctaaaattctaagtgatttgttttcttttacacag

upper sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ15473 (Selaginella moellendorffii), 5'ss of exon 7
TAATTGACTTTGTTAAAGCCCTCTGCAAAGTTTCCATGGATGAGTTACGATCTCCATCTGATCCACGGGTCTTCAGCCTAACAAAGATTGTGGAAATAGCgtaag-gatcaatcttttctttacgatatctgttttgtttttgctcactctctcttatttataccctgtttgttgtaatggcag
|  | || ||||| ||||| || || |||||||| ||||| ||| ||||||||||| ||||||| ||||| |||||||| || || ||||| |||||| ||||||  |||  |   ||||||  | | ||  |||| |   |   | || | |                               
TTGTGGATTTTGTAAAAGCGCTTTGTAAAGTTTCGATGGAGGAGCTACGATCTCCAACTGATCCTCGGGTATTCAGCCTCACCAAAATTGTTGAAATATCgtaagtaatctgtggcttctttctggtctcaattttctaaat-tacgctttttgcag---------------------------