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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTCTTCTGGCGATTTGGATAATACGGCAATTATTGACCAGATTTTGAAGCTTCGCTTGGAAAAAGCTAAGCTTCTTGGTTACAACAATTACGCTGAGgtagagtcatcaacctaagtaaaactgttcttttttctttctaattggcttaatgcgactttctactgttctag

Basic information

species Arabidopsis thaliana
transcript AT5G65620.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G65620.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 6
TGCCTCTTCTGGCGATTTGGATAATACGGCAATTATTGACCAGATTTTGAAGCTTCGCTTGGAAAAAGCTAAGCTTCTTGGTTACAACAATTACGCTGAGgta-gagtcatcaacctaagtaaaactgttcttttttctttctaattggcttaatgcgactttctactgttctag
|||||||  ||| |||||||||||||||| |||||||| ||| ||  |||||||| | |||||||| |||||||||||||||||||  || || || |||||| ||      ||  |   |      |      | || |||  || || ||| ||  |  | ||  | |   ||
TGCCTCTAGTGGAGATTTGGATAATACGGAAATTATTGGCCAAATCCTGAAGCTTAGGTTGGAAAAGGCTAAGCTTCTTGGTTACAGTAACTATGCAGAGgtatgaacttataatgttttttttggagaaaacatctccttc--ataggtttactgaaa--tactgttttatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125277359|gb|EL291444.1|EL291444
EST:     GCTTCGCTTGGAAAAAGCTTAAGCTTCTTGGTTACAACAATTACGCTGAG                         GTAAGCATGGCTATGAAAATGGCTACTGTTGAGAAAGCAGCAG
genomic: GCTTCGCTTGGAAAAAGC-TAAGCTTCTTGGTTACAACAATTACGCTGAGgtagagtcat ... actgttctagGTAAGCATGGCTATGAAAATGGCTACTGTTGAGAAAGCAGCAG
EST: gi|86086112|gb|DR381871.1|DR381871
EST:     AS-TTCGCTTGGAAAAAGCTAAGCTTCTTGGTTACAACAATTACGCTGAG                         GTAAGCATGGCTATGAAAATGGCTACTGTTGAGAAAGCAGCAGAGCTTTTA
genomic: AGCTTCGCTTGGAAAAAGCTAAGCTTCTTGGTTACAACAATTACGCTGAGgtagagtcat ... actgttctagGTAAGCATGGCTATGAAAATGGCTACTGTTGAGAAAGCAGCAGAGCTTTTA