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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTATCAAGAGGAGATGGAGCTATATACTTACGGTTTCCTCATAAAGGATACCGCGAAAAGATTTGGGACCATGTCGCTGGTGCTATAGTTGTTACAGgtaacattaaagcttactctctatgaagctaattttatagtgtcgacatgcggatgtaaatagataaggaatgcaaggttgattcttctttttggtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G63980.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63980.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G09180.1 (Glycine max), 5'ss of exon 7
GCTTTATCAAGAGGAGATGGAGCTATATACTTACGGTTTCCTCATAAAGGATACCGCGAAAAGATTTGGGACCATGTCGCTGGTGCTATAGTTGTTACAGgtaacattaaagcttactctctatgaagctaattttatagtgtcgacatgcggatgtaaatagataaggaatgcaaggttgattcttctttttggtgcag----------
||||| |||||||||||||| |||||||| || || || ||||| ||||||||||| ||||| || ||||| ||||  |||||    || ||||| || |||     |  |  || |  ||| |     |   ||| || | |  |        ||||   ||||  |       ||  |     |  |||  ||||| |          
GCTTTGTCAAGAGGAGATGGGGCTATATATTTGCGTTTCCCTCACAAAGGATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtg----tgtatttttcattcttt----ttgtctttttattatgaattatttcctgtagtaagat--gtttcttcagtcttcacatattttaaggtgctgctgaatagtt

upper sequence: AT5G63980.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA05G26250.1 (Glycine max), 5'ss of exon 7
GCTTTATCAAGAGGAGATGGAGCTATATACTTACGGTTTCCTCATAAAGGATACCGCGAAAAGATTTGGGACCATGTCGCTGGTGCTATAGTTGTTACAGgta-acattaaagcttactct---ctatgaagctaattttatagtgtcgacatgcggatgtaaatagataaggaatgcaaggttgattcttctttttggtgcag
||||| |||||||||||||| |||||||| || || || ||||| | ||||||||| ||||| || ||||| ||||  |||||    || ||||| || |||    |||     ||| | |    |||     |  || ||   |||   | |  |  |  | |||  | | |  |||  | |  ||  || | |||    || 
GCTTTGTCAAGAGGAGATGGGGCTATATATTTGCGTTTCCCTCACAGAGGATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtatttttcattattatgaattatttcctttgttgtacgatgttt-cttcagtcttcacatattttaagg-tgct-gctgaatagttatatttaactca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124979600|gb|EL052626.1|EL052626
EST:     AAAAGATTTGGGACCATGTCGCTGGTGCTATAGTTGTTACAG                         AGGCGGGTGGAATAGTGACAGATGCAGCAGGAAAGCCACTGGACTTCTCGA
genomic: AAAAGATTTGGGACCATGTCGCTGGTGCTATAGTTGTTACAGgtaacattaa ... tttggtgcagAGGCGGGTGGAATAGTGACAGATGCAGCAGGAAAGCCACTGGATTTCTCGA
EST: gi|125320215|gb|EL334300.1|EL334300
EST:     ATACCGCGAAAAGATTTGGGACCATGTCGCTGGTGCTATAGTTGTTACAG                         AGGCGGGTGGAA
genomic: ATACCGCGAAAAGATTTGGGACCATGTCGCTGGTGCTATAGTTGTTACAGgtaacattaa ... tttggtgcagAGGCGGGTGGAA
EST: gi|125095258|gb|EL152465.1|EL152465
EST:     TTTGGGACCATGTCGCTGGTGCTATAGTTGTTACAG                         AGGCGGGTGGAATAGTGACAGATGCAGCAGGAAAGCCACTGGATTTCTCGA
genomic: TTTGGGACCATGTCGCTGGTGCTATAGTTGTTACAGgtaacattaa ... tttggtgcagAGGCGGGTGGAATAGTGACAGATGCAGCAGGAAAGCCACTGGATTTCTCGA
EST: gi|125039234|gb|EL111503.1|EL111503
EST:     ATACCGCGAAAAGATTTGGGACCATGTCGCTGGTGCTATAGTTGTTACAG                         AGGCGGGTGGAATAGTGACAGATGCA
genomic: ATACCGCGAAAAGATTTGGGACCATGTCGCTGGTGCTATAGTTGTTACAGgtaacattaa ... tttggtgcagAGGCGGGTGGAATAGTGACAGATGCA
EST: gi|86080973|gb|DR376730.1|DR376730
EST:     ATACCGCGAAAAGATTTGGGACCATGTCGCTGGTGCTATAGTTGTTACMG                         AGGCGGGTGGAATAGTGACAGATGCAGCAGGAAAGCCACTGGATTTCTCGA
genomic: ATACCGCGAAAAGATTTGGGACCATGTCGCTGGTGCTATAGTTGTTACAGgtaacattaa ... tttggtgcagAGGCGGGTGGAATAGTGACAGATGCAGCAGGAAAGCCACTGGATTTCTCGA