1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CGCGAGGTTAATTCAAAGGGTTGCTCCAAAGAGTTACCAGCAAGCTGCTGGAGAAGTCTTTGTCACACGGAAGTTTTTAGAAAACTTTTGTGGTGATCAGgtacattactctcttcaccattttttattttggttcctggctattagtttcaacaacttagtaattcttgaaggcatgttctcaaaaatgcctatatagacatttcatgtttgtggctgaatttccgaaattacatctttaaatgtatgtttatgatttcgcttcactttcttttatcag
species | Arabidopsis thaliana |
transcript | AT5G62530.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGTCTTTGTCACAAGGAAGTTTTTAGAAAACTTTTGTGGTGATCAG GTGCGGTTCCTAGCACGGTCTTTTGCAATCCCTGGGAATCATCTTGGGCAGEST: gi|125294873|gb|EL308958.1|EL308958
genomic: GAGAAGTCTTTGTCACACGGAAGTTTTTAGAAAACTTTTGTGGTGATCAGgtacattact ... cttttatcagGTGCGGTTCCTGGCACGGTCTTTTGCAATCCCTGGGAATCATCTTGGGCAG
EST: AGAAAACTTTTGTGGTGATCAG GTGCGGTTCCTGGCACGGTCTTTTGCAATCCCTGGGAATCATCTTGGGCAGEST: gi|86069297|gb|DR365054.1|DR365054
genomic: AGAAAACTTTTGTGGTGATCAGgtacattact ... cttttatcagGTGCGGTTCCTGGCACGGTCTTTTGCAATCCCTGGGAATCATCTTGGGCAG
EST: GAGAAGTCTTTGTCACAAGGAAGTTTTTAGAAAACTTTTGTGGTGATCAG GTGCGGTTCCTAGCACGGTCTTTTGCAATCCCTGGGAATCATCTTGGGCAG
genomic: GAGAAGTCTTTGTCACACGGAAGTTTTTAGAAAACTTTTGTGGTGATCAGgtacattact ... cttttatcagGTGCGGTTCCTGGCACGGTCTTTTGCAATCCCTGGGAATCATCTTGGGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGAGGTTAATTCAAAGGGTTGCTCCAAAGAGTTACCAGCAAGCTGCTGGAGAAGTCTTTGTCACACGGAAGTTTTTAGAAAACTTTTGTGGTGATCAGgtacattactctcttcaccattttttattttggttcctggctattagtttcaacaacttagtaattcttgaaggcatgttctcaaaaatgcctatatagacatttcatgtttgtggctgaatttccgaaattacatctttaaatgtatgtttatgatttcgcttcactttcttttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT