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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttatatcctcttttgtattttcatctcagtttctttattaccaccacattctcagaagcttatgagtttggatcttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G62240.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116430574|gb|EG473166.1|EG473166
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430576|gb|EG473168.1|EG473168
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATATGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430569|gb|EG473161.1|EG473161
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430545|gb|EG473137.1|EG473137
EST:     GCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTTGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430547|gb|EG473139.1|EG473139
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTCGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430546|gb|EG473138.1|EG473138
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTCGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430548|gb|EG473140.1|EG473140
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430549|gb|EG473141.1|EG473141
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430567|gb|EG473159.1|EG473159
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430536|gb|EG473128.1|EG473128
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430565|gb|EG473157.1|EG473157
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430559|gb|EG473151.1|EG473151
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTTGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430571|gb|EG473163.1|EG473163
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430537|gb|EG473129.1|EG473129
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430560|gb|EG473152.1|EG473152
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTTGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430541|gb|EG473133.1|EG473133
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTTGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430542|gb|EG473134.1|EG473134
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTTGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430555|gb|EG473147.1|EG473147
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430578|gb|EG473170.1|EG473170
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430540|gb|EG473132.1|EG473132
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTTGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430552|gb|EG473144.1|EG473144
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTTGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430582|gb|EG473174.1|EG473174
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430551|gb|EG473143.1|EG473143
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTTGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430556|gb|EG473148.1|EG473148
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430558|gb|EG473150.1|EG473150
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430585|gb|EG473177.1|EG473177
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430544|gb|EG473136.1|EG473136
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTTGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430554|gb|EG473146.1|EG473146
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430580|gb|EG473172.1|EG473172
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
EST: gi|116430538|gb|EG473130.1|EG473130
EST:     GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT                         ATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG
genomic: GAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttata ... gatcttgcagATTAATCTGGAACCTGTTTCAACATCTTTGGCTAAAACTAATACGCCACGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAATgtactttatatcctcttttgtattttcatctcagtttctttattaccaccacattctcagaagcttatgagtttggatcttgcag

- - - - - - - - - -  AGAGCA
- - - - - - - - - - - GAGCAG
- - - - - - - - - - - - GCAGAT