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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAAATGAAGGCCAGTAATAGTGTTCGACACATTGCTATTCCTTGTAATAAGGCAGCCATGGCTCGGTTGATTCCTGATATTATCAGTTGCTATAGCAGgtatcctttagtactacattttctaaccaatatttatacttcaattatttttgtcttatccaatttttgttttcactatctag

Basic information

species Arabidopsis thaliana
transcript AT5G62190.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125314142|gb|EL328227.1|EL328227
EST:     CAGTTGCTATAGCAG                         TGGAGGCCAAACTATTATTTTCGCTGAAACTAAAAGTTCAAGTTTCTGAGC
genomic: CAGTTGCTATAGCAGgtatccttta ... cactatctagTGGAGGCCAAACTATTATTTTCGCTGAAACT-AAAGTTCAAGTTTCTGAGC
EST: gi|125322620|gb|EL336705.1|EL336705
EST:     CAGTTGCTATAGCAG                         TGGAGGCCAAACTATTATTTTCGCTGAAACTAAAGTTCAAGTTTCTGAGCT
genomic: CAGTTGCTATAGCAGgtatccttta ... cactatctagTGGAGGCCAAACTATTATTTTCGCTGAAACTAAAGTTCAAGTTTCTGAGCT
EST: gi|47828150|gb|CK117834.1|CK117834
EST:     AAGGCAGCCATGGCTCGGTTGATTCCTGATATTATCAGTTGCTATAGCAG                         TGGAGGCCAAACTATTATTTTCGCTGAGACTAAAGTTCAAGTTTCTGAGCT
genomic: AAGGCAGCCATGGCTCGGTTGATTCCTGATATTATCAGTTGCTATAGCAGgtatccttta ... cactatctagTGGAGGCCAAACTATTATTTTCGCTGAAACTAAAGTTCAAGTTTCTGAGCT
EST: gi|125004454|gb|EL076723.1|EL076723
EST:     AGGCAGCCATGGACTCGGTTGATTCCTGATATTATCAGTTGCTATAGCAG                         TGGAGGCCAAACTATTATTTTCGCTGAAACTAAAGTT
genomic: AGGCAGCCATGG-CTCGGTTGATTCCTGATATTATCAGTTGCTATAGCAGgtatccttta ... cactatctagTGGAGGCCAAACTATTATTTTCGCTGAAACTAAAGTT