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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATCTTTGTATCTGTGGATCTGGATAATGAGGATTATGGGAAGCCAGTCGCTGAATACTTTGGTGTGTCTGGAAATGGTCCTAAAgtaagtctattgtttttattttgttatgtgtttaagagttgcacatttaaaagaatttgagtcctagatcttttcgataagacatactgatacatctcaaacgttggtctgtgtatag

Basic information

species Arabidopsis thaliana
transcript AT5G60640.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124821644|gb|EH906510.1|EH906510
EST:     ATGGGAAGCCAGTCGCTGAATACTTTGGTGTGTCTGGAAATGGTCCTAAA                         CTTATTGGCTACA
genomic: ATGGGAAGCCAGTCGCTGAATACTTTGGTGTGTCTGGAAATGGTCCTAAAgtaagtctat ... ctgtgtatagCTTATTGGCTACA
EST: gi|86064530|gb|DR360287.1|DR360287
EST:     ATGGGAAGCCAGTCGCTGAATACTTTGGTGTGTCTGGAAATGGTCCTAAA                         CTTATTGGCTACACAGGGAATGAAGACCCTAAAAAATACTTTTTCGATGGC
genomic: ATGGGAAGCCAGTCGCTGAATACTTTGGTGTGTCTGGAAATGGTCCTAAAgtaagtctat ... ctgtgtatagCTTATTGGCTACACAGGGAATGAAGACCCTAAAAAATACTTTTTCGATGGC