Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATCTGAAAGTTAAGGGAGAGCCTGAAGACCCCTTCCAACCAGAAATTAAAGTTCGATGTGTTTGTGGAAACTCGCTAGAAACAGACTCAATGATACAGgtaatctgggatgaactcactgcgtttattcctgtttgagctgactgtagacaatttctttgtattttatggtcgatggtgtgatgtatttatcattgattacatttgtgaagtttggtgatactttctggctgtaatttttgttttttttcttccgatttcag

Basic information

species Arabidopsis thaliana
transcript AT5G60410.4
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163999951|gb|ES107942.1|ES107942
EST:     AAGTTCGATGTGTTTGTGGAAACTCGCTAGAAACAGACTCAATGATACAG                         TGTGAGGATCCAAGATGCCAT
genomic: AAGTTCGATGTGTTTGTGGAAACTCGCTAGAAACAGACTCAATGATACAGgtaatctggg ... ccgatttcagTGTGAGGATCCAAGATGCCAT
EST: gi|116462446|gb|EG505038.1|EG505038
EST:     AAGTTCGATGTGTTTGTGGAAACTCGCTAGAAACAGACTCAATGATACAG                         TGTGAGGATCCAAGATGCCATGTTTGGCAGCATGTTGGCTGTGTTATTCTC
genomic: AAGTTCGATGTGTTTGTGGAAACTCGCTAGAAACAGACTCAATGATACAGgtaatctggg ... ccgatttcagTGTGAGGATCCAAGATGCCATGTTTGGCAGCATGTTGGCTGTGTTATTCTC