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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGAACCAAGTTTAGAAAGGCTATGAACAAAGCTGATAATGATGCTAGCACAAGGGCCATTGATTCTCTGATAAATTATGAGgtaaatttttaatcttaatcattttgcttgacttgcagttttgacagaatttctttttcgtttcag

Basic information

species Arabidopsis thaliana
transcript AT5G58270.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58270.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G40490.1 (Glycine max), 5'ss of exon 7
TGGCGAACCAAGTTTAGAAAGGCTATGAACAAAGCTGATAATGATGCTAGCACAAGGGCCATTGATTCTCTGATAAATTATGAGgtaaat-ttttaatc-ttaat--cattttgct-----tgactt-------gcagttttgacagaatttctttttcgtttcag--------
||| | || || || || || || ||||| || || |||||||||||||| |||||||  |||||||| || || ||||||||||| |   ||||| || |||||  || |||  |     |  |||       |   |||||  |  | |  |||||  ||   |        
TGGAGGACTAAATTCAGGAAAGCCATGAATAAGGCAGATAATGATGCTAGTACAAGGGTTATTGATTCACTTATTAATTATGAGgtgagcattttagtcattaatgccagttttttaatgctatcttccttttcgtgtttttgttaccactgttttttttttcttgatttgcag

upper sequence: AT5G58270.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 10
TGGCGAACCAAGTTTAGAAAGGCTATGAACAAAGCTGATAATGATGCTAGCACAAGGGCCATTGATTCTCTGATAAATTATGAGgt----aaatttttaatcttaatcattttgcttgacttgcagttttgacagaatttctttttcgtttcag--------------------------------------------
||| |||| || ||||| |||   ||||| ||||| ||||||||||| || |||||||| |||||||| || || |||||||||||    | || | |  | | ||   |||   |  | ||  | | | ||     || ||||| |     |                                             
TGGAGAACTAAATTTAGGAAGATCATGAATAAAGCCGATAATGATGCAAGTACAAGGGCAATTGATTCACTTATCAATTATGAGgtttcaatatatctcttataaaggctttctttctagtt--aatgtcgatgcctttccttttcctagctaatattctttatataacttccactcacttaaatgttctaatttcag