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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCAGCAGCTGAAGGTGAACCAACAAGTATATTGGATGAGGCTACTCACACTAATCCAGCAGACGAGgtttgaaaaattatttcacacatatgcttttccaaaagtggtgcaatctgttacttgaaatgggatgatgatacgaggtttgcctacaatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G56360.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164199392|gb|EL968764.1|EL968764
EST:     AATCCAGCAGACGAG                         CATGTTGTGGAGAG-AAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCC
genomic: AATCCAGCAGACGAGgtttgaaaaa ... tacaatgcagCATGTTGTGGAGAGAAAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCC
EST: gi|125183892|gb|EL198846.1|EL198846
EST:     ACACTAATCCAGCAGACGAG                         CATGTTGTGGAGAGAAAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCC
genomic: ACACTAATCCAGCAGACGAGgtttgaaaaa ... tacaatgcagCATGTTGTGGAGAGAAAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCC
EST: gi|125293329|gb|EL307414.1|EL307414
EST:     AACCAACAAGTATATTGGATGAGGCTACTCACACTAATCCAGCAGACGAG                         CATGTTGTGGAGAGAAAAGAGGAA
genomic: AACCAACAAGTATATTGGATGAGGCTACTCACACTAATCCAGCAGACGAGgtttgaaaaa ... tacaatgcagCATGTTGTGGAGAGAAAAGAGGAA
EST: gi|164166896|gb|ES042452.1|ES042452
EST:     TCACACTAATCCAGCAGACGAG                         CATGTTGTGGAGAGAAAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCC
genomic: TCACACTAATCCAGCAGACGAGgtttgaaaaa ... tacaatgcagCATGTTGTGGAGAGAAAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCC
EST: gi|164236004|gb|ES056163.1|ES056163
EST:     TCACACTAATCCAGCAGACGAG                         CATGTTGTGGAGAGAAAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCC
genomic: TCACACTAATCCAGCAGACGAGgtttgaaaaa ... tacaatgcagCATGTTGTGGAGAGAAAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCC