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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGATATCATAGTCGATGCGACTGATAATCCTCCAAGCCGTTACATGATCAGTGATTGTTGTGTCTTGTTAGGAAAGgtgaatcattttctgaactctctgtatatacgctgtaaacaatggtgatacctgagtacttcaatagaattatgtagtcagttttataggcaccggtgttgagtattgactgagcgtttgtactttgtatacag

Basic information

species Arabidopsis thaliana
transcript AT5G55130.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G55130.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G46300.1 (Glycine max), 5'ss of exon 6
ATATGATATCATAGTCGATGCGACTGATAATCCTCCAAGCCGTTACATGATCAGTGATTGTTGTGTCTTGTTAGGAAAGgtgaatc---attttctgaactctctgtatat-acg-ctgtaaacaatggtgatacctgagtacttcaatagaattatgtagtcagttttataggcac-cggtgttgagtattgactgagcgtttgtactttgtatacag
||||||||| ||||| ||||| || |||||| |||| | ||| ||| ||||||||||||| |||||  |  | |||||||| ||||   || || ||| || |    | || | | |  |    | || ||   | || |   ||  |     || |    | | |||| | |   | |  ||                                    
ATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGATCAGTGATTGCTGTGTGGTCCTTGGAAAGgtaaatcttaatgttttgatctatggacaaattatgaccatttgaattgatgccgcatgggccttttcac----ttgttgctttaattttttggttcctccatg------------------------------------

upper sequence: AT5G55130.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA14G02410.1 (Glycine max), 5'ss of exon 5
ATATGATATCATAGTCGATGCGACTGATAATCCTCCAAGCCGTTACATGATCAGTGATTGTTGTGTCTTGTTAGGAAAGgtgaatc---attttctgaactctctgtatatac--gctgtaaacaatggtgatacctgagtacttcaatagaattatgtagtcagttttataggcac-cggtgttgagtattgactgagcgtttgtactttgtatacag
||||||||| ||||| ||||| || |||||| |||| | ||| ||| ||||||||||||| |||||  |  |||||||||| ||||   || || |||  | |    | ||     |  |    | |  || ||| || |   ||  |     || |    | | |||| | |   | |  ||                                    
ATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGATACTTGATCAGTGATTGCTGTGTGGTTCTAGGAAAGgtaaatcttaatgttttgatgtatgaacagattgtgaccatttgaattaatgttacatgggccttttcac----ttgttgctttaattttttggttcctccatg------------------------------------